View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14115_low_42 (Length: 235)
Name: NF14115_low_42
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14115_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 44261609 - 44261402
Alignment:
| Q |
15 |
tataactgttgattcaaccaacggttgagattatgataaaatacttgtgtttgtgtgtgatgaactataagttgttaaatcttaagcagttgatttccta |
114 |
Q |
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| T |
44261609 |
tataactgttgattcaaccaacggttgagattatgataaaatacttgtgtttgtgtgtgatgaaatataagttgttaaatcttaagcagttgatttccta |
44261510 |
T |
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| Q |
115 |
ttaacttcatactgtaagtttgtcacttcatataatatgatattgtcttccaaaaattaacaataccaatttgttggtcgctcttcattattttttcatg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44261509 |
ttaacttcatactgtaagtttgtcacttcatataatatgatattgtcttccaacaattaacaataccaatttgttggtcgctcttcattattttttcatg |
44261410 |
T |
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| Q |
215 |
ttctcctt |
222 |
Q |
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|||||||| |
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| T |
44261409 |
ttctcctt |
44261402 |
T |
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