View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14115_low_46 (Length: 211)
Name: NF14115_low_46
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14115_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 3e-96; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 43548895 - 43548714
Alignment:
| Q |
11 |
cagcacagacagcaattatcttgtcatctttctcgccctgaacatcataagaattagtggctgatcaataataatcagaagagaaattattgctatcttc |
110 |
Q |
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| T |
43548895 |
cagcacagacagcaattatcttgtcatctttctcgccctgaacatcataagaattagtggctgatcaataataatcagaagagaaattattgctatcttc |
43548796 |
T |
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| Q |
111 |
aaaatggaatgtctcacagacctgatcgatcataggcatgagtccaatagctttggcacggagaaagcaacctggaacaact |
192 |
Q |
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| T |
43548795 |
aaaatggaatgtctcacagacctgatcgatcataggcatgagcccaatagctttggcacggagaaagcaacctggaacaact |
43548714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 12 - 187
Target Start/End: Complemental strand, 50901304 - 50901129
Alignment:
| Q |
12 |
agcacagacagcaattatcttgtcatctttctcgccctgaacatcataagaattagtggctgatcaataataatcagaagagaaattattgctatcttca |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| ||||||||| ||||||||||||||||| || || |
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| T |
50901304 |
agcacagacagcaattatcttgtcatctttctcgccctgagtttcataagaattagcggttgatcattaataatcaaaagagaaattattgctagctaca |
50901205 |
T |
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| Q |
112 |
aaatggaatgtctcacaga-cctgatcgatcataggcatgagtccaatagctttggcacggagaaagcaacctggaa |
187 |
Q |
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| T |
50901204 |
aaatggaaggtctcacatagcctgatcaatcatcgacatgagtccaatagc-ttggcatggagaaagcaacctggaa |
50901129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 29369119 - 29368938
Alignment:
| Q |
11 |
cagcacagacagcaattatcttgtcatctttctcgccctgaacatcataagaattagtggctgatcaataataatcagaagagaaattattgctatcttc |
110 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||| || | || |||| ||||||| |||| |
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| T |
29369119 |
cagcacagacagcaatgatcttgtcatctttctcaccctgaatttcataagaattagtgattgatcgataatgataaaaaaagaagttattgccatctgg |
29369020 |
T |
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| Q |
111 |
aaaatggaatgtctcacagacctgatcgatcataggcatgagtccaatagctttggcacggagaaagcaacctggaacaact |
192 |
Q |
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||| ||||||| ||| | |||||||| ||||| |||||||| ||||||||||||||||| |||||||| ||||||| |||| |
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| T |
29369019 |
gaaagggaatgtttcagatacctgatcaatcatgggcatgagaccaatagctttggcacgaagaaagcagcctggaagaact |
29368938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 50910105 - 50910065
Alignment:
| Q |
13 |
gcacagacagcaattatcttgtcatctttctcgccctgaac |
53 |
Q |
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| T |
50910105 |
gcacagacagcgaatatcttgtcatctttctcgccctgaac |
50910065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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