View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14115_low_48 (Length: 207)

Name: NF14115_low_48
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14115_low_48
NF14115_low_48
[»] chr4 (2 HSPs)
chr4 (18-201)||(42535095-42535278)
chr4 (102-201)||(42529457-42529556)
[»] chr7 (2 HSPs)
chr7 (38-78)||(27821899-27821939)
chr7 (126-180)||(27822084-27822138)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 42535095 - 42535278
Alignment:
Q  18 ctaacgacctcatcaggagactcttctacaacaagaacaatgactcacttattacagtgtcaagccgaagtaggatgccggaggaatacagatcaacacg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42535095 ctaacgacctcatcaggagactcttctacaacaagaacaatgactcacttattacagcgtcaagccgaagtaggatgccggaggaatacagatcaacacg 42535194  T
Q  118 cattgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42535195 cattgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgt 42535278  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 42529457 - 42529556
Alignment:
Q  102 aatacagatcaacacgcattgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgt 201  Q
    |||||||||||||| | |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  42529457 aatacagatcaacaagtattgaatacacaaggagggccaagccggatgccggttttgatctttttcagtcagattcttttgttgtaaaatttgatgatgt 42529556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 27821899 - 27821939
Alignment:
Q  38 ctcttctacaacaagaacaatgactcacttattacagtgtc 78  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27821899 ctcttctacaacaagaacaatgactcacttattacagtgtc 27821939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 27822084 - 27822138
Alignment:
Q  126 acataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttt 180  Q
    |||||| |||||||||||||||||| ||||||  |||||| ||||| ||||||||    
T  27822084 acataaagagggccaagccggatgctggttttcctcttttccagtccgagtcttt 27822138  T

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