View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14115_low_7 (Length: 530)
Name: NF14115_low_7
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14115_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 17 - 525
Target Start/End: Original strand, 25407834 - 25408343
Alignment:
| Q |
17 |
agaatcttgacgaaaaagaaaacggataacttcaaattaactttatcccattaatcgcgaaacttgatcctaatccttt-ataatcactcttttcctata |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25407834 |
agaatcttgacgaaaaagaaaacggataacttcaaattaactttatcccattaatcgcgaaacttgatcctaatccttttataatcactcttttcctata |
25407933 |
T |
|
| Q |
116 |
taaactccatctaatcacctctcatcttctatattcacattcttccttcttactacgctattaaaatcaattcgctcttttttctctcacaacgatccca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25407934 |
taaactccatctaatcacctctcatcttctatattcacattcttccttcttactacgctattaaaatcaattcgctcttttttctctcacaacgatccca |
25408033 |
T |
|
| Q |
216 |
aaccaatggcctccaacgcttccctcctccccgccaccggctccggtctcatcgtcagctttggcgagatgctcattgacttcgttccaaccgattccgg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25408034 |
aaccaatggcctccaacgcttccctcctccccgccaccggctccggtctcatcgtcagctttggcgagatgctcattgacttcgttccaaccgcttccgg |
25408133 |
T |
|
| Q |
316 |
cgtctcccttgctgaaccacctggctttctgaaagctcccggtggcgcacccgctaacgttgcgatcgctgtttcacgactcggtggtaaatcagccttc |
415 |
Q |
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|||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25408134 |
cgtctcccttgcagaagcacctggctttctcaaagctcccggtggcgcacccgctaacgttgcgatcgctgtttcacgactcggtggtaaatcagccttc |
25408233 |
T |
|
| Q |
416 |
gtcggaaaactcggtgatgatgaattcggtcacatgctcgccgggatcttgaaagaaaacaacgtgagaggggatggtatcaactttgacaaaggcgctc |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25408234 |
gtcggaaaactcggtgatgatgaattcggtcacatgctcgccgggatcttgaaagaaaacaacgtgagaggggatggtatcaactttgacaaaggcgctc |
25408333 |
T |
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| Q |
516 |
gtactgcact |
525 |
Q |
| |
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|||||||||| |
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| T |
25408334 |
gtactgcact |
25408343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 260 - 475
Target Start/End: Original strand, 42375051 - 42375266
Alignment:
| Q |
260 |
ggtctcatcgtcagctttggcgagatgctcattgacttcgttccaaccgattccggcgtctcccttgctgaaccacctggctttctgaaagctcccggtg |
359 |
Q |
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||||||||||||||||| || |||||||| || ||||| || ||||| | ||||| |||||||| || ||| | || || || || ||||||||||| | |
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| T |
42375051 |
ggtctcatcgtcagcttcggtgagatgctgatcgactttgtcccaacagtctccggggtctccctcgcagaagcccccggtttcctcaaagctcccggcg |
42375150 |
T |
|
| Q |
360 |
gcgcacccgctaacgttgcgatcgctgtttcacgactcggtggtaaatcagccttcgtcggaaaactcggtgatgatgaattcggtcacatgctcgccgg |
459 |
Q |
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| ||||| || ||||| || ||||||||||| ||| | || |||||| | ||||| ||||| ||||| || ||||| || |||||||||||||| ||||| |
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| T |
42375151 |
gtgcaccagcgaacgtcgccatcgctgtttcccgattaggcggtaaagctgcctttgtcgggaaactaggcgatgacgagttcggtcacatgcttgccgg |
42375250 |
T |
|
| Q |
460 |
gatcttgaaagaaaac |
475 |
Q |
| |
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|||||| || |||||| |
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|
| T |
42375251 |
gatcttaaaggaaaac |
42375266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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