View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14115_low_8 (Length: 481)
Name: NF14115_low_8
Description: NF14115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14115_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 8 - 235
Target Start/End: Complemental strand, 33133144 - 33132915
Alignment:
| Q |
8 |
agcacagatgaaattaaattacgaaacagctagctccaatgggtttaataaataataaagctcaatttcttaagatggaaacaatattctcttcgtgttt |
107 |
Q |
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| T |
33133144 |
agcacaaatgaaattaaattacgaaacagctagctccaatgggtttaataaataataaagctcaatttcttaagatggaaacaatattctcttcgtgttt |
33133045 |
T |
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| Q |
108 |
tggaggtgtggttaacccaattctcatcc--nnnnnnnnngttgccgatatcaatttcttatccttaataaggccaaaataacataatttgtatttgacc |
205 |
Q |
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| T |
33133044 |
tggaggtggggttaacccaattctcatcctttttttttttgttgctgatatcaatttcttatccttaataaggccaaaataacataatttgtatttgacc |
33132945 |
T |
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| Q |
206 |
aacaatgtattgattaaagtgttaagagac |
235 |
Q |
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| T |
33132944 |
aacaatgtattgatttaagtgataagagac |
33132915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 326 - 468
Target Start/End: Complemental strand, 33132902 - 33132767
Alignment:
| Q |
326 |
cccattgatttctcgacagaaattagtcattgttaagcggtggtggaaacttcctaccaatgcatgatatnnnnnnnncttatatttgtcaagcaacaat |
425 |
Q |
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| T |
33132902 |
cccattgatttctcgacagaaattagtcattgttaagcggttgtggaaacttcctacc-------gatataaaaaaaacttatatttgtcaagcaacaat |
33132810 |
T |
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| Q |
426 |
cttaaataggaaaaatattagatatagtttgatataatgtttc |
468 |
Q |
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| T |
33132809 |
cttaaataggaaaaatattagatatagtttgatataatgtttc |
33132767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 386
Target Start/End: Complemental strand, 32729366 - 32729315
Alignment:
| Q |
334 |
tttctcgacagaaattagtcattgttaagcggtggtggaaacttcctaccaat |
386 |
Q |
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| T |
32729366 |
tttctcgac-gagattagtcattgttaagcggttgtggaaacttcataccaat |
32729315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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