View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14116_high_10 (Length: 227)
Name: NF14116_high_10
Description: NF14116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14116_high_10 |
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| [»] chr8 (4 HSPs) |
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| [»] scaffold0470 (1 HSPs) |
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| [»] scaffold0514 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 6805339 - 6805117
Alignment:
| Q |
1 |
atatattgaatatatacgtaccttaattaatttggcttagctaatttactcgtatagctcaaaatgctatttgtgtattgtggagttggactgtgctttt |
100 |
Q |
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| T |
6805339 |
atatattgaatatatacgtaccttaattaatttggcttagctaatttactcgtatagctgaaaatgctatttgtgtattgtggagttggactgtgctttt |
6805240 |
T |
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| Q |
101 |
gaagccaagtaaggcagacatgcatatatatacacattaaacttaattcataaggttaagttgagatgctttttaatatttttaaattgcgattgcggcc |
200 |
Q |
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| T |
6805239 |
gaagccaagtaaggcaga----catatatatacacattaaacgtaattcataaggttaggttgagatgctttttaatatttttaaattgcggttgcggcc |
6805144 |
T |
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| Q |
201 |
atggctgttgcaacttgaaatgatttt |
227 |
Q |
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| T |
6805143 |
atgtctgttgcaacttgaaatgatttt |
6805117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 6593005 - 6592833
Alignment:
| Q |
15 |
tacgtaccttaattaatttggcttagctaatttactcgtatagctcaaaatgctatttgtgtattgtggagttggactgtgcttttgaagccaagtaagg |
114 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||| |||||| |
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| T |
6593005 |
tacgtaccttaattaatttggcttagctaattcactcgtatagctcaaaatgctatttgtgtattgtgaatgtggactgtacttttgaagccatgtaagg |
6592906 |
T |
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| Q |
115 |
cagacatgcatatatatacacattaaacttaattcataaggttaagttgagatgctttttaatatttttaaattgcg |
191 |
Q |
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| T |
6592905 |
caga----tatatatatacagactaaacttacttcataaggttagtttgggatgctttttaatatttttaaattgcg |
6592833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 6618709 - 6618538
Alignment:
| Q |
15 |
tacgtaccttaattaatttggcttagctaatttactcgtatagctcaaaatgctatttgtgtattgtggagttggactgtgcttttgaagccaagtaagg |
114 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||| ||||| |
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| T |
6618709 |
tacgtaccttaattaatttggcttagctaattcactcgtatagctcaaaatgctatttgtgtattgtgaatgtggactgtacttttgaagccaaataagg |
6618610 |
T |
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| Q |
115 |
cagacatgcatatatatac-acattaaacttaattcataaggttaagttgagatgctttttaatatttttaaattgcg |
191 |
Q |
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| T |
6618609 |
cag------atatatatacaagactaaacttacttcataaggttagtttggaatgctttttaatatttttaaattgcg |
6618538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 6792607 - 6792436
Alignment:
| Q |
15 |
tacgtaccttaattaatttggcttagctaatttactcgtatagctcaaaatgctatttgtgtattgtggagttggactgtgcttttgaagccaagtaagg |
114 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| | |||||||| ||||||||||||||||||| |
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| T |
6792607 |
tacgtaccttaattaatttggcttagctaattcactcgtatagctcaaaatgatatttgtgtattgtgaatgtggactgtacttttgaagccaagtaagg |
6792508 |
T |
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| Q |
115 |
cagacatgcatatatatacacattaaacttaattcataaggttaagttgagatgctttttaatatttttaaattg |
189 |
Q |
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| T |
6792507 |
cagatat--atatataca-agactaaacttacttcataaggttagttcggaatgctttttaatatttttaaattg |
6792436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 8027 - 7856
Alignment:
| Q |
15 |
tacgtaccttaattaatttggcttagctaatttactcgtatagctcaaaatgctatttgtgtattgtggagttggactgtgcttttgaagccaagtaagg |
114 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||| ||||| |
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| T |
8027 |
tacgtaccttaattaatttggcttagctaattcactcgtatagctcaaaatgctatttgtgtattgtgaatgtggactgtacttttgaagccaaataagg |
7928 |
T |
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| Q |
115 |
cagacatgcatatatatac-acattaaacttaattcataaggttaagttgagatgctttttaatatttttaaattgcg |
191 |
Q |
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| T |
7927 |
cag------atatatatacaagactaaacttacttcataaggttagtttggaatgctttttaatatttttaaattgcg |
7856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0514 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0514
Description:
Target: scaffold0514; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 4016 - 4187
Alignment:
| Q |
15 |
tacgtaccttaattaatttggcttagctaatttactcgtatagctcaaaatgctatttgtgtattgtggagttggactgtgcttttgaagccaagtaagg |
114 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| | |||||||| ||||||||||||||||||| |
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| T |
4016 |
tacgtaccttaattaatttggcttagctaattcactcgtatagctcaaaatgatatttgtgtattgtgaatgtggactgtacttttgaagccaagtaagg |
4115 |
T |
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| Q |
115 |
cagacatgcatatatatacacattaaacttaattcataaggttaagttgagatgctttttaatatttttaaattg |
189 |
Q |
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|||| || ||||||| | | | |||||||| |||||||||||| | | |||||||||||||||||||||||| |
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| T |
4116 |
cagatat--atatataca-agactaaacttacttcataaggttagttcggaatgctttttaatatttttaaattg |
4187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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