View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14116_high_5 (Length: 387)
Name: NF14116_high_5
Description: NF14116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14116_high_5 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 7 - 387
Target Start/End: Original strand, 33223394 - 33223774
Alignment:
| Q |
7 |
ttgcatatgcaattgaagatcgtttctttcttcatcatcattctcagtctcggtctcggattcaatctcaatcaattgtctgttctcataatagtgctgc |
106 |
Q |
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| T |
33223394 |
ttgcatatgcaattgaagatcgtttctttcttcatcatcattctcagtctcggtatcggattcaatctcaatcaattgtctgttctcataatagtgctgc |
33223493 |
T |
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| Q |
107 |
cttctttgagttacagcaccactatcagggcatgccttccaattccaaatccttgttgtagatacttgttgaaacatttgaagcaatgtcatagaagggt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223494 |
cttctttgagttacagcaccactatcagggcatgccttccaattccaaatccttgttgtagatacttgttgaaacatttgaagcaatgtcatagaagggt |
33223593 |
T |
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| Q |
207 |
gttcaaaaggacccttcattgaaacatccaaaccattattgtttaacacagtaataactacttccgttgaaagccagacatcaacnnnnnnnngaaaaaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
33223594 |
gttcaaaaggacccttcattgaaacatccaaaccattattgtttaatacagtaataactacttccgttgaaagcccgacatcaacttttttttgaaaaaa |
33223693 |
T |
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| Q |
307 |
tcccggcatcattatnnnnnnnncaatctctacaagtagcataatagtgtgctactgtcactgcaccagacttttcaactc |
387 |
Q |
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| T |
33223694 |
tcccggcatcattataaaaaaaacaatctgtacaagtagcataatagtgtgctactgtcactgcaccagacttttcaactc |
33223774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 48 - 235
Target Start/End: Original strand, 33226350 - 33226543
Alignment:
| Q |
48 |
tctcagtctcggtctcggattcaatctcaatcaattgtctgttctcataatagtgctgccttctttgagttacagc-accactatcagggcatgccttcc |
146 |
Q |
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| T |
33226350 |
tctcagtctcggtctcaggttcaatctcaaccagttgtctgttctcagaatagtgctgccttctttcagttacaaccaccactatcagggcatgccttcc |
33226449 |
T |
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| Q |
147 |
aattccaaatccttgttgtagatacttgttgaaacatttgaagcaa-----tgtcatagaagggtgttcaaaaggacccttcattgaaacatcc |
235 |
Q |
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| T |
33226450 |
acttccaaatccttgttgtagatacttgttgaaacatttgaagcaatttcttttcttagaagggtgttcagaaggacccttcattgaaacatcc |
33226543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 137 - 243
Target Start/End: Complemental strand, 33246026 - 33245920
Alignment:
| Q |
137 |
catgccttccaattccaaatccttgttgtagatacttgttgaaacatttgaagcaatgtcatagaagggtgttcaaaaggacccttcattgaaacatcca |
236 |
Q |
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|||||| |||| |||||||||| |||| |||||||||||| |||||||||||| ||| || ||||||||||||| ||||| |||||||||||||||||| |
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| T |
33246026 |
catgccgtccacttccaaatccatgttctagatacttgttcaaacatttgaaggaataccaaagaagggtgttcataaggatccttcattgaaacatcca |
33245927 |
T |
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| Q |
237 |
aaccatt |
243 |
Q |
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|| |||| |
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| T |
33245926 |
aatcatt |
33245920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 33226664 - 33226708
Alignment:
| Q |
343 |
tagcataatagtgtgctactgtcactgcaccagacttttcaactc |
387 |
Q |
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| T |
33226664 |
tagcataatagtgtgctactctcactgcaccagacttttcaactc |
33226708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 271
Target Start/End: Original strand, 33226558 - 33226593
Alignment:
| Q |
236 |
aaaccattattgtttaacacagtaataactacttcc |
271 |
Q |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
33226558 |
aaaccattattgtttaccacagtaataactacttcc |
33226593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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