View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14116_low_1 (Length: 555)
Name: NF14116_low_1
Description: NF14116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14116_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 12 - 541
Target Start/End: Original strand, 26985093 - 26985623
Alignment:
| Q |
12 |
atgaatcaaactctttactaattgaaccaaccttcaatcagcttatacac--ataattttaattgctacgtttattattaattatacattagaattggat |
109 |
Q |
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| T |
26985093 |
atgaatcaaactctttaccgattgaaccaaccttgaattagcttatagccttatacacataattt-tacgtttattattaattatacattagaattgaat |
26985191 |
T |
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| Q |
110 |
atttagtttactaagtataaattttgaatcttgattcttggattttaccaagcaacgttatatttttaatttcatcaaatcatctgatatatatgattat |
209 |
Q |
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| T |
26985192 |
atttagtttactaagtataaattttgaattttgattcttggattttaccaagcaacgttatatttttaatttcatcaaatcatctgatatatatgattat |
26985291 |
T |
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| Q |
210 |
gacacttcattagcaaatgattatgacatttacacagattcatatggactaatcaannnnnnnnctcaattagttattcaataaaaacaaaaattctaca |
309 |
Q |
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| T |
26985292 |
gacacttcattagcaaatgattatgacacttacacagattcatatggactaatcaattttttttctcaattagttattcaataaaaacaaaaattctaca |
26985391 |
T |
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| Q |
310 |
attttcatttcattaatcaacgctttaatttctttaaatttaagttggatatttttaaacaattattaaaatattcatcatatgtattttatattttctc |
409 |
Q |
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| T |
26985392 |
attttcatttcattaatcaacgctttaatttctttaaatttaagttggatatttttaaacaattattaaaatattcatcatatgtattttatattttctc |
26985491 |
T |
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| Q |
410 |
aaacttatatttccctgaaatgctcatacacgaccctgaaaacgtgctacaacctacaagttggtttgggtcacatgtcaatttcatttctaacttattg |
509 |
Q |
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| T |
26985492 |
caacttatatttccctgaaatgctcatacacgaccctgaaaacgtgctacaacctacaagttggtttgggtcacatgtcaatttcatttctaacttattg |
26985591 |
T |
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| Q |
510 |
ctatcaaaatcaactgttaaacaaggacttat |
541 |
Q |
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| T |
26985592 |
ctatcaaaatcaactgttaaacaaggacttat |
26985623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 132 - 265
Target Start/End: Original strand, 26983152 - 26983293
Alignment:
| Q |
132 |
tttgaatcttgattcttggattttaccaagcaacgttat--------atttttaatttcatcaaatcatctgatatatatgattatgacacttcattagc |
223 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||| ||| ||||||||||||| || ||||| |
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| T |
26983152 |
tttgaatcttgattcttggattttaccaagtaacgttattctttcaaatttttaatttcctcaaatcatctaataaatatgattatgaccctcttttagc |
26983251 |
T |
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| Q |
224 |
aaatgattatgacatttacacagattcatatggactaatcaa |
265 |
Q |
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| T |
26983252 |
aaatgcatatgacacttgtacagattgatattgactaatcaa |
26983293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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