View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14116_low_2 (Length: 511)
Name: NF14116_low_2
Description: NF14116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14116_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 1743708 - 1743216
Alignment:
| Q |
1 |
tcatcaaatttcacaatctgggttggacctagatttgattaatctttccaaccaaagaacacttcctgttgatggattgcgagaactcggtacaaagatg |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1743708 |
tcatcaaatttcacaatctgggttggaccttgatttgattaatctttccaaccaaagaacacttcctgttgatggattgcgagaactcggtacaaagatg |
1743609 |
T |
|
| Q |
101 |
ataaacttgagggttttgatttgctcaaacattggctctcttcgcgatagccatctggtagtgatagcttattgtttcccatttcttgaagagcttgata |
200 |
Q |
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|||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | |
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| T |
1743608 |
ataaacttgagggttttgatttgctcgaacgttggatctcttcgcgatagccatctggtagtgatagcttattgctttccatttcttgaagagcttgaca |
1743509 |
T |
|
| Q |
201 |
ttagctttcctttggattctcaagcatctgattttggattactaaggctatcttccatgcttgagaatctgcgcaggatcgatctttccggtaatcactt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| ||||||||||| |
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| T |
1743508 |
ttagctttcctttggattctcaagcatctgattttggattactaaggctgtcttccatgcttgagaatctgtgcaagatcgatctttctggtaatcactt |
1743409 |
T |
|
| Q |
301 |
gataactgataaatcacttttgtctctatgccagaactgcagatcattggaagaaatttcattcttccaatgtttcaagatatcccaagctggaattgct |
400 |
Q |
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||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
1743408 |
gatcactgataaatctcttttgtctctatgccagaactgcagatcattggaagaaatttcattcttccaatgcttcaagatatcccaagatggaattgct |
1743309 |
T |
|
| Q |
401 |
tttgctatccgaatgaggccaagtttgtcttccatttcttttaacattgaaaagaaaagaatacatggacctggtttgacacccctacctatt |
493 |
Q |
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| T |
1743308 |
tctgctatccgaatgaggccaagtttgtcttccatttcttttaacatcgaaaagaaaagaatacatggacctggtttgactcccttacctatt |
1743216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Original strand, 2006674 - 2007166
Alignment:
| Q |
1 |
tcatcaaatttcacaatctgggttggacctagatttgattaatctttccaaccaaagaacacttcctgttgatggattgcgagaactcggtacaaagatg |
100 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||||| |||||||||||||||| |||||| |||||||||||||||||||||| |||||| |||||||| |
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| T |
2006674 |
tcatcaagtttcacaatctgggctggaccttgatttcgttaatctttccaaccagagaacagttcctgttgatggattgcgagagctcggttcaaagatg |
2006773 |
T |
|
| Q |
101 |
ataaacttgagggttttgatttgctcaaacattggctctcttcgcgatagccatctggtagtgatagcttattgtttcccatttcttgaagagcttgata |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||| | |
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| T |
2006774 |
ataaacctgagggttttgatttgctcaaacattggctctctttgcgatagccatctggtagtgatagcttattgctttccatttcttgaagagcttgaca |
2006873 |
T |
|
| Q |
201 |
ttagctttcctttggattctcaagcatctgattttggattactaaggctatcttccatgcttgagaatctgcgcaggatcgatctttccggtaatcactt |
300 |
Q |
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| T |
2006874 |
ttagctttcctttggattctcaagcatctgattttggattaataaggtaatcttccatgctcgagaatctgcgcaaaattgatctttctggtaatcactt |
2006973 |
T |
|
| Q |
301 |
gataactgataaatcacttttgtctctatgccagaactgcagatcattggaagaaatttcattcttccaatgtttcaagatatcccaagctggaattgct |
400 |
Q |
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| || |||||||| ||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||| |||||||||| |||||||||| |
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| T |
2006974 |
aaccaccgataaatcccttttgtctctatgccagaactgtagatcactggaagaaattttattcttccaatgtttcaaaatatcccaagttggaattgct |
2007073 |
T |
|
| Q |
401 |
tttgctatccgaatgaggccaagtttgtcttccatttcttttaacattgaaaagaaaagaatacatggacctggtttgacacccctacctatt |
493 |
Q |
| |
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| ||| |||||||||| |||||||||| |||| || || |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2007074 |
tctgcgatccgaatgatgccaagtttggcttcgatatcctttaacattgaaaagaaaagaagacatggacctggtttgacacccctacctatt |
2007166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 354 - 493
Target Start/End: Original strand, 1498475 - 1498614
Alignment:
| Q |
354 |
aaatttcattcttccaatgtttcaagatatcccaagctggaattgcttttgctatccgaatgaggccaagtttgtcttccatttcttttaacattgaaaa |
453 |
Q |
| |
|
|||||||||||||| |||||| |||||| |||||| ||| ||| || ||| ||| ||| | || |||||| |||||||||||||||| ||||||| |
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| T |
1498475 |
aaatttcattcttcacatgttttaagataacccaagttggccttgtttgtgcaatcaaaataattcctagtttgggttccatttcttttaacgttgaaaa |
1498574 |
T |
|
| Q |
454 |
gaaaagaatacatggacctggtttgacacccctacctatt |
493 |
Q |
| |
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||||||| ||||||||||||| |||| ||||||||||||| |
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| T |
1498575 |
gaaaagactacatggacctggattgaaacccctacctatt |
1498614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 1749055 - 1749015
Alignment:
| Q |
46 |
ttccaaccaaagaacacttcctgttgatggattgcgagaac |
86 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
1749055 |
ttccaaccagagaacacttccccttgatggattgcgagaac |
1749015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 44577567 - 44577603
Alignment:
| Q |
1 |
tcatcaaatttcacaatctgggttggacctagatttg |
37 |
Q |
| |
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|||||||||||||||| ||||||||||||| |||||| |
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| T |
44577567 |
tcatcaaatttcacaaactgggttggaccttgatttg |
44577603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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