View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14116_low_3 (Length: 465)

Name: NF14116_low_3
Description: NF14116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14116_low_3
NF14116_low_3
[»] chr6 (1 HSPs)
chr6 (19-454)||(34687495-34687930)
[»] chr2 (7 HSPs)
chr2 (19-454)||(26985446-26985871)
chr2 (19-145)||(27079499-27079625)
chr2 (19-124)||(27025601-27025706)
chr2 (316-454)||(27079863-27079996)
chr2 (395-450)||(27025366-27025421)
chr2 (207-237)||(27025488-27025518)
chr2 (201-237)||(27079689-27079725)
[»] chr7 (2 HSPs)
chr7 (248-454)||(30227883-30228088)
chr7 (83-237)||(30228123-30228291)


Alignment Details
Target: chr6 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 19 - 454
Target Start/End: Complemental strand, 34687930 - 34687495
Alignment:
Q  19 tgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaattaattcatgggataaactatcagatgaaattca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34687930 tgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaattaattcatgggataaactatcagatgaaattca 34687831  T
Q  119 atattaattcaaagtactttcaatgaatatgaggaatttcaatgagaagaggaattttacacaatcaatcatataagaaagaaatttcttaatctcaaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34687830 atattaattcaaagtactttcaatgaatatgaggaatttcaatgagaagaggaattttacacaatcaatcatataagaaagaaatttcttaatctcaaat 34687731  T
Q  219 caacaatgatatacaatttaaaggactccatgaagtaactaaattgttacccattagaaacgtccaaaatcttatcaatcgaaacattcgcagaagtaaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34687730 caacaatgatatacaatttaaaggactccatgaagtaactaaattgttacccattagaaacgtccaaaatcttatcaatcgaaacattcgcagaagtaaa 34687631  T
Q  319 aatcaatataaatttaaaggactgcatatgttacagaaacactatgaatgaatactcttaaatatgaaatttgttaattcttcgcataatacctttactc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34687630 aatcaatataaatttaaaggactgcatatgttacagaaacactatgaatgaatactcttaaatatgaaatttgttaattcttcgcataatacctttactc 34687531  T
Q  419 gtagaggatcaccaaattccaaagattgcttttctt 454  Q
    ||||||||||||||||||||||||||||||||||||    
T  34687530 gtagaggatcaccaaattccaaagattgcttttctt 34687495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 19 - 454
Target Start/End: Complemental strand, 26985871 - 26985446
Alignment:
Q  19 tgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaattaattcatgggataaactatcagatgaaattca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26985871 tgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaattaattcatgggataaactatcagatgaaattca 26985772  T
Q  119 atattaattcaaagtactttcaatgaatatgaggaatttcaatgagaagaggaattttacacaatcaatcatataagaaagaaatttcttaatctcaaat 218  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||    
T  26985771 atattaattcaaagtagtttcaatgaatatgaggaatttcaatgagaagaggaat----------caatcatataagaaagaaatttcttaatctcaaat 26985682  T
Q  219 caacaatgatatacaatttaaaggactccatgaagtaactaaattgttacccattagaaacgtccaaaatcttatcaatcgaaacattcgcagaagtaaa 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  26985681 caacaatgatatacaatttaaaggactccatgaagtaactaaattgttacccattagaacggtccaaaatcttatcaatcgaaacattcgcagaagtaaa 26985582  T
Q  319 aatcaatataaatttaaaggactgcatatgttacagaaacactatgaatgaatactcttaaatatgaaatttgttaattcttcgcataatacctttactc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26985581 aatcaatataaatttaaaggactgcatatgttacagaaacactatgaatgaatactcttaaatatgaaatttgttaattcttcgcataatacctttactc 26985482  T
Q  419 gtagaggatcaccaaattccaaagattgcttttctt 454  Q
    ||||||||||||||||||||||||||||||||||||    
T  26985481 gtagaggatcaccaaattccaaagattgcttttctt 26985446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 27079499 - 27079625
Alignment:
Q  19 tgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaattaattcatgggataaactatcagatgaaattca 118  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  27079499 tgaagtacctaagttgttagattctttggaattaatcgtagttggcaaacatacatccaactttaattaattcatgggataaactatcaaatgaaattca 27079598  T
Q  119 atattaattcaaagtactttcaatgaa 145  Q
    |||||||||||||||||||||||||||    
T  27079599 atattaattcaaagtactttcaatgaa 27079625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 27025706 - 27025601
Alignment:
Q  19 tgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaattaattcatgggataaactatcagatgaaattca 118  Q
    |||||||||||||||||||||||| |||||||| |||||||||||  |||||||| | |||||||||||||||||||| |||||| ||| ||||||||||    
T  27025706 tgaagcacctaagttgttagattcgttggaattaatcgtagttggctaacatacagccaactttaattaattcatgggctaaactgtcaaatgaaattca 27025607  T
Q  119 atatta 124  Q
    ||||||    
T  27025606 atatta 27025601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 316 - 454
Target Start/End: Original strand, 27079863 - 27079996
Alignment:
Q  316 aaaaatcaatataaatttaaaggactgcatatgttacagaaacactatgaatgaatactcttaaatatgaaatttgttaattcttcgcataataccttta 415  Q
    |||||||||||||||||||||| |||| || || || ||||||| ||||| |  | |||||||||||| ||||||||||||||||| |   |||||||||    
T  27079863 aaaaatcaatataaatttaaagcactgtatgtgctatagaaacagtatgactatagactcttaaatataaaatttgttaattcttccc---ataccttta 27079959  T
Q  416 ctcgtagaggatcaccaaattccaaagattgcttttctt 454  Q
    |||  || ||||||| |||||||||||||||||| ||||    
T  27079960 ctc--agtggatcacgaaattccaaagattgcttctctt 27079996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 395 - 450
Target Start/End: Complemental strand, 27025421 - 27025366
Alignment:
Q  395 attcttcgcataatacctttactcgtagaggatcaccaaattccaaagattgcttt 450  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27025421 attcttcgcataatacctttactcttagaggatcaccaaattccaaagattgcttt 27025366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 237
Target Start/End: Complemental strand, 27025518 - 27025488
Alignment:
Q  207 ttaatctcaaatcaacaatgatatacaattt 237  Q
    |||||||||||||||||||||||||||||||    
T  27025518 ttaatctcaaatcaacaatgatatacaattt 27025488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 27079689 - 27079725
Alignment:
Q  201 aatttcttaatctcaaatcaacaatgatatacaattt 237  Q
    ||||||||||||||||||||  |||||||||||||||    
T  27079689 aatttcttaatctcaaatcattaatgatatacaattt 27079725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 248 - 454
Target Start/End: Complemental strand, 30228088 - 30227883
Alignment:
Q  248 atgaagtaactaaattgttacccattagaaacgtccaaaatcttatcaatcgaaacattcgcagaagtaaaaatcaatataaatttaaaggactgcatat 347  Q
    ||||||||||||||||||||||||||||||  ||||||||||||| |||||||||  |||||| ||||||||||||||||||||||||||||||||||||    
T  30228088 atgaagtaactaaattgttacccattagaacggtccaaaatcttaccaatcgaaaatttcgca-aagtaaaaatcaatataaatttaaaggactgcatat 30227990  T
Q  348 gttacagaaacactatgaatgaatactcttaaatatgaaatttgttaattcttcgcataatacctttactcgtagaggatcaccaaattccaaagattgc 447  Q
    |||| ||||||||||||| |  | |||||| |||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30227989 gttagagaaacactatgactataaactcttgaatacgaaatttgttgattcttcgcataatacctttactcttagaggatcaccaaattccaaagattgc 30227890  T
Q  448 ttttctt 454  Q
    |||||||    
T  30227889 ttttctt 30227883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 83 - 237
Target Start/End: Complemental strand, 30228291 - 30228123
Alignment:
Q  83 aattaattcatgggataaactatcagatgaaattcaatattaattcaaagtactttcaatgaatatgaggaatttcaatgagaagaggaattttacaca- 181  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||     
T  30228291 aattaattcatgggataaactatcagatgaaattcagtattaattcaaagtactttcaatcaagatgaggaatttcaatgaggagaggaattttacacat 30228192  T
Q  182 -------------atcaatcatataagaaagaaatttcttaatctcaaatcaacaatgatatacaattt 237  Q
                 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30228191 atacccaaaatcgatcaatcatataagaaagaaatttcttaatctcaaaccaacaatgatatacaattt 30228123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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