View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14116_low_5 (Length: 440)
Name: NF14116_low_5
Description: NF14116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14116_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 5 - 424
Target Start/End: Original strand, 33528675 - 33529095
Alignment:
| Q |
5 |
tgtcgaagaatatagcttctttttccacttccacggtcgcttcggaagtatacttccagaaagaaaaagaaaaacattgttctttt-gctctctggaagt |
103 |
Q |
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| T |
33528675 |
tgtccaagaaaatagcttctttttccacttccacggtcgcttcggaagtatacttccagaaagaaaaagaaaaacattgttctttttgctctctggaagt |
33528774 |
T |
|
| Q |
104 |
attcttccggacaaaaacacaaatttattcatgtccggatgtatacttccgaacacacgtgtgatcttttagaaagcatggagggaaagaagctcataac |
203 |
Q |
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| T |
33528775 |
attcttccggacaaaaacacaaatttattcatgtccggatgtatacttccgaacacacgtgtgatcttttagaaagcatggagggaaagaagctcataac |
33528874 |
T |
|
| Q |
204 |
aagaaaaggtaaatatttatgtagtgtttaatactaatttttctaccaatcttcaagccattcaggcacattaagttcttctacctcttctaatggagac |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33528875 |
aagaaaaggtaaatatttatgtagtgtttaatactaatttttctaccaatcttcaagccattcaggcacattaagttcttctacctcttctaatggagac |
33528974 |
T |
|
| Q |
304 |
tcaacagaagcggaagaatcctcataacgaacttccaagtattgtgttatacgagaaataatttctggaggaactggaaaagtgtggtctctaagtgctt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| ||||||||||| |
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| T |
33528975 |
tcaacagaagcggaagaatcctcataacgaacttccaagtattgtgttatacgagaaacaatttctggaggaacaggaaaagcgtggtgtctaagtgctt |
33529074 |
T |
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| Q |
404 |
cccagtcgataccgttaaacc |
424 |
Q |
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| T |
33529075 |
cccagtcgataccgttaaacc |
33529095 |
T |
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