View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14116_low_8 (Length: 310)
Name: NF14116_low_8
Description: NF14116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14116_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 13393524 - 13393229
Alignment:
| Q |
1 |
aatgaaagttttattctaatgatatgaatatgaatatgaa------aaagaaagaagagttctattctagaattgcttggagcaaaggttgcttaaaggc |
94 |
Q |
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| T |
13393524 |
aatgaaagttttattctaatgatatgaatatgaatatgaatatgaaaaagaaagaagagttctattctagaattgcttggagcaaaggttgcttaaaggc |
13393425 |
T |
|
| Q |
95 |
caaagattcctactgtttgagatttaatactaagttgtaacacaagagctattgttaattagcaccataagtttatgacttatgagtgatgaagaaaaag |
194 |
Q |
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| T |
13393424 |
caaagattcctactgtttgagattttatactaagttgtaacacaagagctattgttaattagcaccataagtttatgacttatgagtgatgaagaaaaag |
13393325 |
T |
|
| Q |
195 |
atagtgctaaagttttatgacaaagcaaacacgtgtacatgatgacactttcactcactcacaaagttgagtgtgtctttcagttaattcagttatttta |
294 |
Q |
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| T |
13393324 |
atagtgctaatgttttatgacaaagcaaacacgtgtacatgatgacactttcac----tcacaaagttgagtgtgtctttcagttaattcagttatttta |
13393229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 167 - 284
Target Start/End: Complemental strand, 13396333 - 13396221
Alignment:
| Q |
167 |
ttatgacttatgagtgatgaagaaaaagatagtgctaaagttttatgacaaagcaaacacgtgtacatgatgacactttcactcactcacaaagttgagt |
266 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||| ||||| || ||||| ||||||| |||||||||| |
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| T |
13396333 |
ttatgacttatgagtgatgaagaaaaagatagtgccaatgttttatgacaaagcaaatacgtttacattat--aacttt---tcactcataaagttgagt |
13396239 |
T |
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| Q |
267 |
gtgtctttcagttaattc |
284 |
Q |
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||| |||||| ||||||| |
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| T |
13396238 |
gtgcctttcaattaattc |
13396221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 165
Target Start/End: Complemental strand, 13396453 - 13396349
Alignment:
| Q |
59 |
ttctagaattgcttggagcaaaggttgcttaaaggccaaagattcctactgtttgagatttaatactaagttgtaacacaagagctattgttaattagca |
158 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||||||||||||| || || ||| | | ||||| || || |||||| | ||||||||||||||| |
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| T |
13396453 |
ttcttgaattgcttggagcaaaggttgctt-aaggccaaagattccaaccgtgtgaaaatctatact-aggaataccacaagggatattgttaattagca |
13396356 |
T |
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| Q |
159 |
ccataag |
165 |
Q |
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||||||| |
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| T |
13396355 |
ccataag |
13396349 |
T |
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