View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14116_low_9 (Length: 255)
Name: NF14116_low_9
Description: NF14116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14116_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 40501015 - 40500910
Alignment:
| Q |
18 |
cctaggaacaacgtgggatctcaaaagggtaagtaaccttaaaactcattcattaattatgttctgtcacacgcaaaacctttcaaattccaaaatttta |
117 |
Q |
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| T |
40501015 |
cctaggaacaacgtgggatctcaaaagggtaagtaaccttaaaattcattcattaactatgttctgtcacacgcaaaacctttcaaaatccaaaatttta |
40500916 |
T |
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| Q |
118 |
aaattc |
123 |
Q |
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|||||| |
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| T |
40500915 |
aaattc |
40500910 |
T |
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Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 154 - 248
Target Start/End: Complemental strand, 40500883 - 40500790
Alignment:
| Q |
154 |
aagattctaatgttgttacataatatatttggattagattctaattctcgtattaatcttaatcttttctcccaaaccaagaatatctctctgct |
248 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| |
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| T |
40500883 |
aagattctaatgttgttacataatat-tttggattagattctaattctcgtattaatcttaatcttttctccaacgtcaagaatatctctttgct |
40500790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 248
Target Start/End: Original strand, 36214345 - 36214433
Alignment:
| Q |
154 |
aagattctaatgttgttacataatatatttggattagattctaattctcgtattaatcttaatcttttctcccaaaccaagaatatctctctgct |
248 |
Q |
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|||||||| ||||||||||||| ||||||||| |||||||||||||| ||||| |||||||||||||||| ||||||||||||| |||| |
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| T |
36214345 |
aagattcttatgttgttacata--atatttggacaagattctaattctc--attaa--ttaatcttttctcccacgtcaagaatatctctttgct |
36214433 |
T |
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