View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_high_12 (Length: 606)
Name: NF14117_high_12
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 342 - 599
Target Start/End: Complemental strand, 12162355 - 12162098
Alignment:
| Q |
342 |
cagttatttaaattcattcnnnnnnntagaagcacgacactacaaggattgaagttcaacactataaagaatattctttttaggggcaccgcaaatattt |
441 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12162355 |
cagttatttaaattcattcaaaaaaatagaagcacgacactacaaggattgaagttcaacactataaagaatattctttttaggggcaccgcaaatattt |
12162256 |
T |
|
| Q |
442 |
tagagttgtatattttacagaactaataagttgtataacatctcagaaatatttgtatatgtatatgtatgcatacgaagttgtatatcttaatgaatgc |
541 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12162255 |
tagagttgtatattttacagaactaataagttgtataacatctcagaaatatttgtatatgtatatgtatgcatacgaagttgtatatcttaatgaatgc |
12162156 |
T |
|
| Q |
542 |
atacgttgtagagttgtatatttctaatcggacaacaaaatattgaatgcctttgcta |
599 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12162155 |
atacgttgtagagttgtatatttctaatcggacaacaaaatattgaatgcctttgcta |
12162098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 342 - 599
Target Start/End: Complemental strand, 12406783 - 12406526
Alignment:
| Q |
342 |
cagttatttaaattcattcnnnnnnntagaagcacgacactacaaggattgaagttcaacactataaagaatattctttttaggggcaccgcaaatattt |
441 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12406783 |
cagttatttaaattcattcaaaaaaatagaagcacgacactacaaggattgaagttcaacactataaagaatattctttttaggggcaccgcaaatattt |
12406684 |
T |
|
| Q |
442 |
tagagttgtatattttacagaactaataagttgtataacatctcagaaatatttgtatatgtatatgtatgcatacgaagttgtatatcttaatgaatgc |
541 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12406683 |
tagagttgtatattttacagaactaataagttgtataacatctcagaaatatttgtatatgtatatgtatgcatacgaagttgtatatcttaatgaatgc |
12406584 |
T |
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| Q |
542 |
atacgttgtagagttgtatatttctaatcggacaacaaaatattgaatgcctttgcta |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12406583 |
atacgttgtagagttgtatatttctaatcggacaacaaaatattgaatgcctttgcta |
12406526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 12162682 - 12162468
Alignment:
| Q |
15 |
aaatataattacatctatcatatcaacccgatcaaagttggttccaccctatttttcatcatggtgcctataaatattgctacaactgacttctttaaat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12162682 |
aaatataattacatctatcatatcaacccgatcaaagttggttccaccctatttttcatcatggtgcctataaatattgctacaactgacttctttaaat |
12162583 |
T |
|
| Q |
115 |
ctcacatatttttctttggttcttaattcttctgagtttgcattatattaaaaaccatcattttatgttcaaacatctttcaagctatctctctatatgt |
214 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12162582 |
ctcacatatttttctttggttcttaattcttctgagtttgcattatattaaaaaccatcattttatgttcaaacatctttcaagctatctctctatatgt |
12162483 |
T |
|
| Q |
215 |
ttcagactatgtctc |
229 |
Q |
| |
|
||||||||||||||| |
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| T |
12162482 |
ttcagactatgtctc |
12162468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 12407110 - 12406896
Alignment:
| Q |
15 |
aaatataattacatctatcatatcaacccgatcaaagttggttccaccctatttttcatcatggtgcctataaatattgctacaactgacttctttaaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12407110 |
aaatataattacatctatcatatcaacccgatcaaagttggttccaccctatttttcatcatggtgcctataaatattgctacaactgacttctttaaat |
12407011 |
T |
|
| Q |
115 |
ctcacatatttttctttggttcttaattcttctgagtttgcattatattaaaaaccatcattttatgttcaaacatctttcaagctatctctctatatgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12407010 |
ctcacatatttttctttggttcttaattcttctgagtttgcattatattaaaaaccatcattttatgttcaaacatctttcaagctatctctctatatgt |
12406911 |
T |
|
| Q |
215 |
ttcagactatgtctc |
229 |
Q |
| |
|
||||||||||||||| |
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| T |
12406910 |
ttcagactatgtctc |
12406896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 295
Target Start/End: Complemental strand, 12162440 - 12162402
Alignment:
| Q |
257 |
agcaaggaatgaaatatgttggttgttcttcgaccaatt |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |
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| T |
12162440 |
agcaaggaatgaaatatgttggttgttcttcaaccaatt |
12162402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 295
Target Start/End: Complemental strand, 12406868 - 12406830
Alignment:
| Q |
257 |
agcaaggaatgaaatatgttggttgttcttcgaccaatt |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |
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| T |
12406868 |
agcaaggaatgaaatatgttggttgttcttcaaccaatt |
12406830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 179; Significance: 3e-96; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 382 - 599
Target Start/End: Original strand, 30324169 - 30324380
Alignment:
| Q |
382 |
tacaaggattgaagttcaacactataaagaatattctttttaggggcaccgcaaatattttagagttgtatattttacagaactaataagttgtataaca |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30324169 |
tacaaggattgaagttcaacactataaagaatattctttttaggggcaccgcaaatattttagagttgtatattttacagaactaataagttgtataaca |
30324268 |
T |
|
| Q |
482 |
tctcagaaatatttgtatatgtatatgtatgcatacgaagttgtatatcttaatgaatgcatacgttgtagagttgtatatttctaatcggacaacaaaa |
581 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30324269 |
tctcataaatatttgtatatgtata------catacaaagttgtatatcttaatgaatgcatacgttgtagagttgtatatttccaatcggacaacaaaa |
30324362 |
T |
|
| Q |
582 |
tattgaatgcctttgcta |
599 |
Q |
| |
|
|||||||||| ||||||| |
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|
| T |
30324363 |
tattgaatgcttttgcta |
30324380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 30323768 - 30323948
Alignment:
| Q |
15 |
aaatataattacatctatcatatcaacccgatcaaagttggttccaccctatttttcatcatggtgcctataaatattgctacaactgacttctttaaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30323768 |
aaatataattacatctatcatatcaacccgatcaaagttggttccaccctatttttcatcatggtgcctataaatattgctacaactgacttctttaaat |
30323867 |
T |
|
| Q |
115 |
ctcacatatttttctttggttcttaattcttctgagtttgcattatattaaaaaccatcattttatgttcaaacatctttc |
195 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30323868 |
ctcgcatatttttctttggttcttaattcttctgagtttgcattatattaaaaaccatcattttatgttcaaacatctttc |
30323948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 84 - 229
Target Start/End: Complemental strand, 38617753 - 38617613
Alignment:
| Q |
84 |
ataaatattgctacaactgacttctttaaatctcacatatttttctttggttcttaattcttctgagtttgcattatattaaaaaccatcattttatgtt |
183 |
Q |
| |
|
||||||| |||| ||||||| ||||||| || |||||||||||| ||||||||||||||| |||||||||||||||| ||||||| ||||||||||| || |
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| T |
38617753 |
ataaataatgct-caactgaattctttagatatcacatatttttatttggttcttaattcctctgagtttgcattatcttaaaaatcatcattttatatt |
38617655 |
T |
|
| Q |
184 |
caaacatctttcaagctatctctctatatgtttcagactatgtctc |
229 |
Q |
| |
|
||| ||||||| |||||| ||||||| ||||||| |||||||| |
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|
| T |
38617654 |
caagcatcttt----ctatctatctatatttttcagattatgtctc |
38617613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 389 - 468
Target Start/End: Complemental strand, 38617451 - 38617372
Alignment:
| Q |
389 |
attgaagttcaacactataaagaatattctttttaggggcaccgcaaatattttagagttgtatattttacagaactaat |
468 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| |
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| T |
38617451 |
attgaagttcaacactataaatagtattctttttaggggcaccacaaatattttagagttgtatattttataaaactaat |
38617372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 295
Target Start/End: Complemental strand, 38617586 - 38617548
Alignment:
| Q |
257 |
agcaaggaatgaaatatgttggttgttcttcgaccaatt |
295 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38617586 |
agcaaggagtgaaatatgttggttgttcttcgaccaatt |
38617548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 30323966 - 30324012
Alignment:
| Q |
179 |
atgttcaaacatctttcaagctatctctctatatgtttcagactatgtctc |
229 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30323966 |
atgttcaaacatctttc----tatctctctatatgtttcagactatgtctc |
30324012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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