View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_high_14 (Length: 549)
Name: NF14117_high_14
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 14 - 536
Target Start/End: Original strand, 53681566 - 53682088
Alignment:
| Q |
14 |
agtctgtgttcggtctcagataatcgaaagtgctcatatgaaaaacacataaataatatcaatttaaagattctacaaaacaagagttggtctaagatga |
113 |
Q |
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| T |
53681566 |
agtctgtgttcggtctcagataatcgaaagtgctcatatgaaaaacacataaataatatcaatttaaagattctacaatacaagagttggtctaagatga |
53681665 |
T |
|
| Q |
114 |
atgaacctattagtcattacaaaatagttctactaccaaatggaatcaattaccaatacataacaaagcatttaagttggttacattacataaatttagc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53681666 |
atgaacctattagtcattacaaaatagttctactaccaaatggaataaattaccaatacataacaaagcatttaagttggttacattacataaatttagc |
53681765 |
T |
|
| Q |
214 |
caattttcttgtaaggatctttcatcttttggacatcaatagcactaaaaacaccatagctgctgtttccatcataatcatcatcactaggttgatcaag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53681766 |
caattttcttgtaaggatctttcatcttttggacatcaatagcactaaaaacaccatagctgctgtttccatcataatcatcatcactaggttgatcaag |
53681865 |
T |
|
| Q |
314 |
tgccagtaattcatcattatatttgacactatcaattctcatcttagtcactttcccttgatcaggttcttgtcctttcaaaagactaacaacttgcttc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53681866 |
tgccagtaattcatcattatatttgacactatcaattctcatcttagtcactttcccttgatcaggttcttgtcctttcaaaagactaacaacttgcttc |
53681965 |
T |
|
| Q |
414 |
atgtttggtcgtttctcaggctcactttgcacacaaagagcagctacattaactgtctgtttaacttgattttcatcaaagtttcctctgagttttggat |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53681966 |
atgtttggtcgtttctcaggctcactttgcacacaaagagcagctacattaactgtctgtttaacttgattttcatcaaagtttcctctgagttttggat |
53682065 |
T |
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| Q |
514 |
caaccatatccctaaaccttcct |
536 |
Q |
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| T |
53682066 |
caaccatatccctaaaccttcct |
53682088 |
T |
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