View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_high_18 (Length: 490)
Name: NF14117_high_18
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 36363525 - 36363159
Alignment:
| Q |
1 |
agacttcgttgccgacggcgatggcttcgatttgggttttggggtggtaaacgacgacgnnnnnnnggagccatgtgagggcgtaggagagttttctggc |
100 |
Q |
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| T |
36363525 |
agacttcgttgccgacggcgatggcttcgatttgggttttggggtggtaaacgacgacgtttttttggagccatgtgagggcgtaggagagttttctggc |
36363426 |
T |
|
| Q |
101 |
tgtgtgaaagagttgttcgtttgggaggtttacggttactttgattccggatccggataaggatttgagaacagccgggtcggtgtcgtagagtttgacc |
200 |
Q |
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| T |
36363425 |
tgtgtgaaagagttgttcgtttgggaggtttacggttactttgattccggatccggataaggatttgagaacagccgggtcggtgtcgtagagtttgacc |
36363326 |
T |
|
| Q |
201 |
cggtcgattccttgtgattttagaagcttgactactttgaatgctgagggtaggttgtttgctatgcgaccatagttcactccaatggaactaccatctg |
300 |
Q |
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| T |
36363325 |
cggtcgattccttgtgattttagaagcttgactactttgaatgctgagggtaggttgtttgctatgcgaccatagttcactccaatggaactgccatctg |
36363226 |
T |
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| Q |
301 |
taacaattaataaaagaaatgaaaacaatattagcattctgcatgaaaacaagtaacaataatctatg |
368 |
Q |
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| T |
36363225 |
taacaattaat-aaagaaatgaaaacaatattagcattatgcatgaaaacaagtaacaataatctatg |
36363159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 277
Target Start/End: Original strand, 36986658 - 36986758
Alignment:
| Q |
177 |
gggtcggtgtcgtagagtttgacccggtcgattccttgtgattttagaagcttgactactttgaatgctgagggtaggttgtttgctatgcgaccatagt |
276 |
Q |
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||||| |||||||||| |||||| || || ||||||||||| || || | ||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
36986658 |
gggtctgtgtcgtagattttgacatgggttataccttgtgatttgaggagttgaactactttggttgctgagggtaggttgtttgctatgcgaccgtagt |
36986757 |
T |
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| Q |
277 |
t |
277 |
Q |
| |
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| |
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|
| T |
36986758 |
t |
36986758 |
T |
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