View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_high_19 (Length: 481)
Name: NF14117_high_19
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_high_19 |
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| [»] scaffold0264 (2 HSPs) |
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Alignment Details
Target: scaffold0264 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 40 - 467
Target Start/End: Complemental strand, 14533 - 14109
Alignment:
| Q |
40 |
tatgggatttgaaatgatgtaatttgtactttgtttatatacctctatcattgcaaatnnnnnnnnnnnnnnnnctccatggcttgctcgaatattttct |
139 |
Q |
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| T |
14533 |
tatgggatttgaaatgatgtaatttgtactttgtttatatacctctatcattgcaaataaaaaataaaagaaaactccatggcttgctcgaatattttct |
14434 |
T |
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| Q |
140 |
ttttctctatccttgtttgtttcctctattttgccactatccatgcacaatacaatatacgagagaagaatgtctcagcgtggaagacaatgatttccca |
239 |
Q |
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| T |
14433 |
ttttctctatccttgtttgtttcctctattttgccactatcaatgtacaatgacatatacgagagaagaatgtctcagcgtggaagacaatgatttccca |
14334 |
T |
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| Q |
240 |
ttcttttgctcttcgtggattaggttggacggcttttaattactttttaatgatagaaacaggtggagtaagaactattgtcgcctcgtgctcattctgg |
339 |
Q |
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| T |
14333 |
ttcttttgctctccgtggattaggttggacggcttttaattactttttaatgatagaaacaggtggagtaagaactattgtcgcctcgtgctcattctgg |
14234 |
T |
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| Q |
340 |
tttagtcgagcatgatggctggnnnnnnnnnnnnnatgtaatgaaacattatgcttgcaaggttgatgcttttaggcgagctaggctctttggtaaagta |
439 |
Q |
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| T |
14233 |
tttagtcgagcatgatcgctgg--tttttttatgtat-taatgaaacattatgcttgcaaggttgatgcttttaggcgagctaggctctttggtaaatta |
14137 |
T |
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| Q |
440 |
gtgcattgtactcggtggttggtagatg |
467 |
Q |
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| T |
14136 |
gtgcattgtactcggtggttggtagatg |
14109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 14615 - 14579
Alignment:
| Q |
14 |
aatgaatatttgtaatttgtgtcatctatgggatttg |
50 |
Q |
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| T |
14615 |
aatgaatatttgtaatttgtgtcatctatgggatttg |
14579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 20238810 - 20238746
Alignment:
| Q |
115 |
tccatggcttgctcgaatattttctttttctctatccttgtttgtttcctctattttgccactat |
179 |
Q |
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| T |
20238810 |
tccatggcttcctctaaaattttctttttctctatgtttgttagtttcttctattttgccactat |
20238746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 22132794 - 22132730
Alignment:
| Q |
115 |
tccatggcttgctcgaatattttctttttctctatccttgtttgtttcctctattttgccactat |
179 |
Q |
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| T |
22132794 |
tccatggcttcctctaaaattttctttttctctatgtttgttagtttcttctattttgccactat |
22132730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 434
Target Start/End: Complemental strand, 20234604 - 20234556
Alignment:
| Q |
386 |
cattatgcttgcaaggttgatgcttttaggcgagctaggctctttggta |
434 |
Q |
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| T |
20234604 |
cattatgcttgcgaggttgatacttttagtcgagctaggctcattggta |
20234556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 434
Target Start/End: Complemental strand, 22128588 - 22128540
Alignment:
| Q |
386 |
cattatgcttgcaaggttgatgcttttaggcgagctaggctctttggta |
434 |
Q |
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| T |
22128588 |
cattatgcttgcgaggttgatacttttagtcgagctaggctcattggta |
22128540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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