View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_high_26 (Length: 459)
Name: NF14117_high_26
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 75 - 407
Target Start/End: Original strand, 14052296 - 14052629
Alignment:
| Q |
75 |
tcatattgcacaaattcttatcttttgaatgaaacnnnnnnnnnntgacatcttataatcaactttgcttaaaggtataattcaaatgtgaaacaaccaa |
174 |
Q |
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| T |
14052296 |
tcatattgcacaaattcttatcttttgagtgaaacaaaaaaaaa-tgacatcttataatcaactttgcttaaatgtataattgaaatatgaaacaatcaa |
14052394 |
T |
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| Q |
175 |
cacaaaatagcctattttctttatatatactatagatcaaatgtaatatctcttccgaccaatattcaaactttgattcaacatgttatnnnnnnnnn-- |
272 |
Q |
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| T |
14052395 |
cgcaaaatagcctattttctttatatatactatagatcaaatgtaatatctcttccgaccaatattcaaactttgattcaatatgttataaaaaaaaaaa |
14052494 |
T |
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| Q |
273 |
ctttgatttcattagaaaacccgatccttgttcggaagttggtatatgttgaatttcatcatgtgaaaacaaagagagacatggttttcctttttcaaaa |
372 |
Q |
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| T |
14052495 |
ctttgatttcattagaaaacccaatccttgttcggaagttggtatatgttgaatttcatcatgtgaaaacaaagagagacatggttttcctttgtcaaaa |
14052594 |
T |
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| Q |
373 |
caataattttgtttcatagtatagtacaaaacgaa |
407 |
Q |
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| T |
14052595 |
caataattttgtttcatagtatagtacaaaacgaa |
14052629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 167
Target Start/End: Complemental strand, 24060431 - 24060389
Alignment:
| Q |
125 |
tcttataatcaactttgcttaaaggtataattcaaatgtgaaa |
167 |
Q |
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| T |
24060431 |
tcttataatcaaatttgcttaaaggtataattgaaatgagaaa |
24060389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 31268153 - 31268189
Alignment:
| Q |
186 |
ctattttctttatatatactatagatcaaatgtaata |
222 |
Q |
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| T |
31268153 |
ctattttctttatatataatatagattaaatgtaata |
31268189 |
T |
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