View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_high_27 (Length: 446)
Name: NF14117_high_27
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 137 - 431
Target Start/End: Original strand, 55381494 - 55381788
Alignment:
| Q |
137 |
agggaaccaatgtaaagggagaagtgggagtggtttaaaagctctggttggtattggtgcttttggtggttgaggtcaaagtggaatgatgtaggcagga |
236 |
Q |
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| T |
55381494 |
agggaaccaatgtaaagggagaagtgggagtggtttaaaagctctggttggtattggtgcttttggtggttgaggtcaaagtggaatgatgtaggcagga |
55381593 |
T |
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| Q |
237 |
gcccgaggtgatgtgtgggttcaatgaagcatggcagaactcgcctcacttggcactccaatgttgactcaaagtgttgtttcgtgcacatatggcagat |
336 |
Q |
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| T |
55381594 |
gcccgaggtgttgtgtgggttcaatgaagcatggcagagctcgcctcacttggcactccaatgttgactcaaagtgttgtttcgtgcacatatggcagat |
55381693 |
T |
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| Q |
337 |
cttggaattggagatgaagaaattttgatcaccaaaggaaacgtcattgtcaccaatggtatcaataactcgaccatttttacataggtcaacat |
431 |
Q |
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| T |
55381694 |
cttggaattggagatgaagaaattttgatcaccaaaggaaacgtcattgtcaccaatggtatcagtaacccgaccatttttacataggtcaacat |
55381788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 55381265 - 55381496
Alignment:
| Q |
13 |
aatattcatgatgtttgctttatttgggtggttatagtaattgtgtttgaggtcttgccgttataaagaaggtcctgtggtttcaggtgtgaacttggat |
112 |
Q |
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| T |
55381265 |
aatattcatgatgtttgctttatttgggtggttatagtaattgtgtttgaggtcttgccgttataaagaaggtcctgtggtttcaggtgtgaacttggat |
55381364 |
T |
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| Q |
113 |
ggcgtgaagagcttcctttcaattagggaaccaatgtaaagggagaagtgggagtggtttaaaagctctggttggtattggtgcttttggtggttgaggt |
212 |
Q |
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| T |
55381365 |
ggcgtgaagagcttcctttcaattagggaaccaatgtaaagggagaagtgggagtggtttaaaagctctggttggtcttggtgcttttggtggttgaggt |
55381464 |
T |
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| Q |
213 |
caaagtggaatgatgtaggcaggagcccgagg |
244 |
Q |
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| T |
55381465 |
caaagtggaatgatgtaggcaggagcccgagg |
55381496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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