View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14117_high_28 (Length: 441)

Name: NF14117_high_28
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14117_high_28
NF14117_high_28
[»] chr6 (2 HSPs)
chr6 (154-423)||(32679640-32679909)
chr6 (180-227)||(32679630-32679676)
[»] chr2 (3 HSPs)
chr2 (216-415)||(28136025-28136220)
chr2 (17-107)||(28135839-28135930)
chr2 (109-189)||(28135955-28136035)
[»] chr8 (3 HSPs)
chr8 (244-413)||(44806627-44806795)
chr8 (17-107)||(44806913-44807003)
chr8 (122-189)||(44806806-44806873)
[»] chr3 (3 HSPs)
chr3 (191-357)||(2230444-2230609)
chr3 (109-188)||(2230576-2230655)
chr3 (17-85)||(2230704-2230772)


Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 154 - 423
Target Start/End: Original strand, 32679640 - 32679909
Alignment:
Q  154 aggtttagaagtcaggtacaaccataaaggatgaaaaggtttagaagtcaggtacaacccacaaaggatgaaaaccaacaatacttgtttgttatctcaa 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  32679640 aggtttagaagtcaggtacaaccataaaggatgaaaaggtttagaagtcaggtacaacccataaaggatgaaaaccaacaatacttgtttgttatcttaa 32679739  T
Q  254 atatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacag 353  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32679740 atatcatgtaaaacacatcctaacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacag 32679839  T
Q  354 ttcaaataatgagcggaattataataccttctatacaagtagtgcagcgagttgcctttggtaatgatca 423  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32679840 ttcaaataatgagcggaattataataccttatatacaagtagtgcagcgagttgcctttggtaatgatca 32679909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 32679630 - 32679676
Alignment:
Q  180 aaggatgaaaaggtttagaagtcaggtacaacccacaaaggatgaaaa 227  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  32679630 aaggatgaaaaggtttagaagtcaggtacaa-ccataaaggatgaaaa 32679676  T

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Target: chr2 (Bit Score: 101; Significance: 7e-50; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 216 - 415
Target Start/End: Original strand, 28136025 - 28136220
Alignment:
Q  216 aaaggatgaaaaccaacaatacttgtttgttatctcaaatatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgc-a 314  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||| |    
T  28136025 aaaggatgaaagccaacaatacttatttgttatctcaaatatcatgtaaaacacatcataac-----agctacatgaagaaagagactccatatatgcaa 28136119  T
Q  315 aaaatagcatcgcacagttttcaatagaacacatgacagttcaaataatgagcggaattataataccttctatacaagtagtgcagcgagttgcctttgg 414  Q
    |||| ||||||||| |||   ||||||||||  |||||||||||||||||||| |||  ||| ||||||  |||| |||||||| || ||||||||||||    
T  28136120 aaaacagcatcgcatagtcaccaatagaacatgtgacagttcaaataatgagcagaacaatactaccttggatacgagtagtgcggcaagttgcctttgg 28136219  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 28135839 - 28135930
Alignment:
Q  17 ggcataggataatgaatcattcagctcgcccaagtaataaaagacctaagattaaggagcaaaacaaaatcagat-gccaaaacacaaacca 107  Q
    ||||||||||| ||| ||||||||||| |||||||||||||| ||||||||| ||||||| ||| ||||| |||| |  |||||||||||||    
T  28135839 ggcataggatagtgagtcattcagctcacccaagtaataaaatacctaagataaaggagcgaaaaaaaattagatagtaaaaacacaaacca 28135930  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 28135955 - 28136035
Alignment:
Q  109 gaataataatatgtggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaaa 189  Q
    ||||||||||||  |||||||||||||| ||||| ||| |||||| |||||||||| | |||||||  | |||||||||||    
T  28135955 gaataataatatagggatatgaaaaaacataaggactctggtgattggtttagaagccgggtacaataaaaaaggatgaaa 28136035  T

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Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 244 - 413
Target Start/End: Complemental strand, 44806795 - 44806627
Alignment:
Q  244 gttatctcaaatatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaa 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |||||||| |||||||||||||| |||||||||    
T  44806795 gttatctcaaatatcatgtaaaacacatcataacagcttagctacttgacgaaagagactccgtatgtgcaaaaacagcatcgcacagttatcaatagaa 44806696  T
Q  344 cacatgacagttcaaataatgagcggaattataataccttctatacaagtagtgcagcgagttgcctttg 413  Q
    ||  ||||| |||||||||||||| ||| || | ||||||  ||||||||| ||| || |||||||||||    
T  44806695 catgtgacaattcaaataatgagcagaa-tacactacctttgatacaagtaatgcggcaagttgcctttg 44806627  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 44807003 - 44806913
Alignment:
Q  17 ggcataggataatgaatcattcagctcgcccaagtaataaaagacctaagattaaggagcaaaacaaaatcagatgccaaaacacaaacca 107  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||| ||  |||||||||| | |||| ||||||||    
T  44807003 ggcataggatagtgagtcattcaactcgcccaagtaataaaagacctaagataaaggagcgaagaaaaatcagatactaaaatacaaacca 44806913  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 44806873 - 44806806
Alignment:
Q  122 tggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaaa 189  Q
    |||||||||||||||||||| |||| |||||| |||||||||| | ||||||| || |||| ||||||    
T  44806873 tggatatgaaaaaacttaagtcctctggtgattggtttagaagccgggtacaatcaaaaagaatgaaa 44806806  T

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Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 191 - 357
Target Start/End: Complemental strand, 2230609 - 2230444
Alignment:
Q  191 ggtttagaagtcaggtacaacccacaaaggatgaaaaccaacaatacttgtttgttatctcaaatatcatgtaaaacacatcataacagcttagctacat 290  Q
    |||||||||| ||||||||| | | ||||||||||  || | |||| || |||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  2230609 ggtttagaagccaggtacaatcaa-aaaggatgaaggccgaaaatatttatttgctatctcaaatatcatgtaaaacacatcataacagcttagccacat 2230511  T
Q  291 gaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacagttca 357  Q
    |||||||||||||||||||||||||||| |||||||| | ||| |||||||||||  ||||||||||    
T  2230510 gaagaaagagactccatatatgcaaaaacagcatcgctcggttatcaatagaacatgtgacagttca 2230444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 109 - 188
Target Start/End: Complemental strand, 2230655 - 2230576
Alignment:
Q  109 gaataataatatgtggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaa 188  Q
    |||||||||||| ||||||| ||||||||||||||||| |||||| |||||||||| ||||||||| || ||||||||||    
T  2230655 gaataataatatatggatataaaaaaacttaaggcctctggtgattggtttagaagccaggtacaatcaaaaaggatgaa 2230576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 2230772 - 2230704
Alignment:
Q  17 ggcataggataatgaatcattcagctcgcccaagtaataaaagacctaagattaaggagcaaaacaaaa 85  Q
    ||||||||||| ||| |||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||    
T  2230772 ggcataggatagtgagtcattcagctcgcccaagtaattaaagacctaagataaaggagcgaaaaaaaa 2230704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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