View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14117_high_29 (Length: 439)

Name: NF14117_high_29
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14117_high_29
NF14117_high_29
[»] chr1 (11 HSPs)
chr1 (12-424)||(4872418-4872812)
chr1 (237-293)||(6326689-6326745)
chr1 (237-294)||(14508749-14508806)
chr1 (238-282)||(12535423-12535467)
chr1 (237-293)||(28239162-28239218)
chr1 (238-293)||(12532934-12532989)
chr1 (237-280)||(28231589-28231632)
chr1 (237-282)||(28326411-28326456)
chr1 (141-193)||(677215-677263)
chr1 (238-304)||(12540654-12540720)
chr1 (237-282)||(47569252-47569297)
[»] chr3 (2 HSPs)
chr3 (363-421)||(47924738-47924796)
chr3 (236-288)||(47924856-47924908)
[»] chr5 (1 HSPs)
chr5 (237-294)||(1717979-1718036)
[»] chr2 (2 HSPs)
chr2 (237-294)||(9066378-9066435)
chr2 (237-278)||(9068561-9068602)


Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 12 - 424
Target Start/End: Original strand, 4872418 - 4872812
Alignment:
Q  12 atcatcatctagtcggtagcttatgtgagataggtgaaactaaaagagccatccacttgttcagaaagatagagatggatcttaacagccttcacgaata 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||    
T  4872418 atcatcatctagtcggtagcttatgtgagataggtgaaactaaaagagccatccacttg------------------gatcttaacagccttcacgaata 4872499  T
Q  112 tgttctacaggtacataatatgcaggctgtgcaaagatagacttgtacgtacatcaagcctatgatttttattctgaaatgactgctaagaatatcagct 211  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4872500 tgttctacaggtacataatacgcaggctgtgcaaagatagacttgtacgtacatcaagcctatgatttttattctgaaatgactgctaagaatatcagct 4872599  T
Q  212 ttggttctactatatatcgtaatctatctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttaggcaatttgggccagagc 311  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4872600 gtggttctactatatatcgtaatctatctaatctatggctattgcatcctcggtcaatttaaacaagcaatcaccttctttaggcaatttgggccagagc 4872699  T
Q  312 caccactttacatccttccctgtccaagttttaatgttgcccttgcctctgcttttgttactgatggagagtttaaagatgctaaaactgtagttgctgt 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4872700 caccactttacatccttccctgtccaagttttaatgttgcccttgcctctgcttttgttactgatggagaggttaaagatgctaaaactgtagttgctgt 4872799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 6326745 - 6326689
Alignment:
Q  237 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 293  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||    
T  6326745 atctaatctatggctattgcatcctcggtcaatttgaacaagcaattgccttgttta 6326689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 14508806 - 14508749
Alignment:
Q  237 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 294  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| ||||| |||||    
T  14508806 atctaatctatggttattgcatcgtcggtcaatttaaacaagcaattgccttgtttag 14508749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 12535467 - 12535423
Alignment:
Q  238 tctaatctatggctattgcatcctcggtcaatttaaacaagcaat 282  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  12535467 tctaatctatggctattgcatcaccggtcaatttaaacaagcaat 12535423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 28239162 - 28239218
Alignment:
Q  237 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 293  Q
    ||||| ||||||| |||||||||||||||||||||||||| ||||| | ||||||||    
T  28239162 atctagtctatggttattgcatcctcggtcaatttaaacaggcaattgacttcttta 28239218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 12532989 - 12532934
Alignment:
Q  238 tctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 293  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||| ||||| ||||    
T  12532989 tctaatctatggctattacatcaacggtcaatttaaacaagcaattgccttgttta 12532934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 280
Target Start/End: Original strand, 28231589 - 28231632
Alignment:
Q  237 atctaatctatggctattgcatcctcggtcaatttaaacaagca 280  Q
    ||||||||||||| |||||||||||||||||||||||| |||||    
T  28231589 atctaatctatggttattgcatcctcggtcaatttaaagaagca 28231632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 28326411 - 28326456
Alignment:
Q  237 atctaatctatggctattgcatcctcggtcaatttaaacaagcaat 282  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  28326411 atctaatctttggctattgtatcatcggtcaatttaaacaagcaat 28326456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 677215 - 677263
Alignment:
Q  141 tgcaaagatagacttgtacgtacatcaagcctatgatttttattctgaaatga 193  Q
    |||||||||||||||||||    |||||||||||||||| |||||||||||||    
T  677215 tgcaaagatagacttgtac----atcaagcctatgatttatattctgaaatga 677263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 12540654 - 12540720
Alignment:
Q  238 tctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttaggcaatttggg 304  Q
    |||| |||||||||||||||||   ||||||||||| |||||||| ||||| |||||  ||||||||    
T  12540654 tctagtctatggctattgcatcactggtcaatttaagcaagcaattgccttgtttagagaatttggg 12540720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 47569252 - 47569297
Alignment:
Q  237 atctaatctatggctattgcatcctcggtcaatttaaacaagcaat 282  Q
    |||||| |||||| ||||||||||| |||||||| |||||||||||    
T  47569252 atctaacctatggttattgcatcctgggtcaattcaaacaagcaat 47569297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 421
Target Start/End: Complemental strand, 47924796 - 47924738
Alignment:
Q  363 cttttgttactgatggagagtttaaagatgctaaaactgtagttgctgtgatggtaaaa 421  Q
    |||| |||||||| |||||| |||||||||||||||||||||| |||||||||||||||    
T  47924796 ctttagttactgaaggagaggttaaagatgctaaaactgtagtggctgtgatggtaaaa 47924738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 47924908 - 47924856
Alignment:
Q  236 tatctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgcctt 288  Q
    ||||||||| |||||||||||||| ||||| ||||||||||||| || |||||    
T  47924908 tatctaatcaatggctattgcatcatcggtgaatttaaacaagcgattgcctt 47924856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 1717979 - 1718036
Alignment:
Q  237 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 294  Q
    ||||||||||||| ||||||||| | |||||||||||||||||||| ||||| |||||    
T  1717979 atctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttag 1718036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 9066378 - 9066435
Alignment:
Q  237 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 294  Q
    ||||||||||||| ||||| ||| ||||||||||||||| |||||| ||||| |||||    
T  9066378 atctaatctatggttattgtatcgtcggtcaatttaaaccagcaattgccttgtttag 9066435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 9068561 - 9068602
Alignment:
Q  237 atctaatctatggctattgcatcctcggtcaatttaaacaag 278  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  9068561 atctaatctatggctattgcatcgttggtcaatttaaacaag 9068602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University