View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_high_30 (Length: 439)
Name: NF14117_high_30
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 38 - 412
Target Start/End: Original strand, 31710226 - 31710601
Alignment:
| Q |
38 |
ggctattattggctcaattattatgaacaaaaacaaaggacaagcaaaattattctaggctagttttgataatgtacgagtaattcataattgcatttga |
137 |
Q |
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| T |
31710226 |
ggctattattggctcaattattatgaagaaaaacaaaggacaagcaaaattattctaggctagttttgataatgtactagtaattcataattgcatttga |
31710325 |
T |
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| Q |
138 |
attatgttaaaatcatatatatgattcgagaaaatggccacggtattttgcaaaattaaggtggctcttcgtaattttgacaaatctactgagatatcag |
237 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| ||||||||||||||||||||||| ||| |
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| T |
31710326 |
attatgctaaaatcatatatatgattcgagaaaatggccacggtaatttacaaaattaaggtggcttttcgtgattttgacaaatctactgagataccag |
31710425 |
T |
|
| Q |
238 |
acatgatatataccaggccgaaatgattagtgagaactagataaaaacaaattctcaaaccaataatactcttaacatatgtttggtttgacgtttaaat |
337 |
Q |
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||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
31710426 |
acatgatatatacgaggccgaaatgactggtgagaactagataaaaacaaattctcaaaccaataatattcttaacatatgtttggtttgaagtttaaat |
31710525 |
T |
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| Q |
338 |
cttcaatcgcgtatcctatactacttttgccacaatttcattaatg-cccaaagccaaacataagtgctaaaaatg |
412 |
Q |
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||||||||||| || |||||||||||||||| |||||||||||| | ||||||||||| ||||||||||||||||| |
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| T |
31710526 |
cttcaatcgcgcattctatactacttttgccgcaatttcattaaagccccaaagccaagcataagtgctaaaaatg |
31710601 |
T |
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