View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_high_31 (Length: 438)
Name: NF14117_high_31
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 424
Target Start/End: Complemental strand, 41678035 - 41677631
Alignment:
| Q |
19 |
ttgcacatgaggtttgatcaaaacaagtttatcttttgcttcaaatattttattttgtgctataaccgagcaacatagaaatatgtggtgagttgtgcca |
118 |
Q |
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| T |
41678035 |
ttgcacatgaggtttgatcaaaacaagtttatattttgcttcaaatattttattttgtgctataaccgagcaacatagaaatatgtggtgagttgtgcca |
41677936 |
T |
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| Q |
119 |
tctcttgttatttatcaggactattgatgattgaattatctgtttttatggaaatcaaatagtgttttcaatgannnnnnnnattctatttaggaagtat |
218 |
Q |
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| T |
41677935 |
tctcttgttatttatcaggactattgatgattgaattatctgtttttatggaaatcaaa--gtgttttcaatgattttttttattctatttaggaagtat |
41677838 |
T |
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| Q |
219 |
gttt-atgttatgttggaaggtacttgtattattatatcaagaaacaaaatagtaaagctatgttatggtgaaataattgactcaaaaaatagtttcatc |
317 |
Q |
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| T |
41677837 |
gttttatgttatgttggaaggtacttgtattattatatcaagaaacaaaatggtaaagctatgttatggtgaaataattgactcaaaaaatagtttcatc |
41677738 |
T |
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| Q |
318 |
tctgcagttgcgaatgttaatatcatctataaaacaatatcaaaaagatagagagtatccaaactcattctgaattttattttagactcagaattctaag |
417 |
Q |
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| T |
41677737 |
tctgcagttgcgaatgttaatatcatctataaaacaatatcaaaaagatagagagtatccaaactcattctgaattttattttggactcagaattctaag |
41677638 |
T |
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| Q |
418 |
acctatg |
424 |
Q |
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| T |
41677637 |
acctatg |
41677631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 41688677 - 41688556
Alignment:
| Q |
31 |
tttgatcaaaacaagtttatctttt--gcttcaaatattttattttgtgctataaccgagcaacatagaaatatgtggtgagttgtgccatctcttgtta |
128 |
Q |
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| T |
41688677 |
tttgattaaaacaagtttatcttttttgtttcggatatttt---ttgggctataattgagcaacatagaaatatgtggtgagttgtgccatctcttgtgt |
41688581 |
T |
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| Q |
129 |
tttatcaggactattgatgattgaa |
153 |
Q |
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| T |
41688580 |
tttataagtaatattgatgattgaa |
41688556 |
T |
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