View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14117_high_32 (Length: 425)
Name: NF14117_high_32
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_high_32 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 19106166 - 19105758
Alignment:
| Q |
1 |
atctataaacaaaatatcatactaattcatcacataactttacaatgaaactaagctaatatggaaacaatcaatcaattgaatttattaataaaaacag |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19106166 |
atctataaacaaaatatcataccaattcatcgcataactttacaatgaaactaagctaatatggaaacaatcaatcaattgaatttattaataaaaacag |
19106067 |
T |
|
| Q |
101 |
acctaacaaactgagaaggaatgcatcagttgaattaattcataatgagtaaaaattgacctaaaaacacaaacaggacaacctttttggcaacatagtc |
200 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19106066 |
acctaacaaactggcaaggaattcatcagttgaattaattcataatgagtaaaaattgacctaaaaacacaaacaggacaacctttttggcaacatagtc |
19105967 |
T |
|
| Q |
201 |
ttaaagcctcaatcatattctcaaactgctgatcgaaagactggtttttgttggtacgcttgttaccactgagatcccttccacaacttccagtataaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19105966 |
ttaaagcctcaatcatattctcaaactgctgatcgaaagactggtttttgttggtacgcttgttaccactgagatcccttccacaacttccagtataaag |
19105867 |
T |
|
| Q |
301 |
gaaccattaaccatgatccttgtcatcaacgtaacctccagaaagagcaacaaattgagcgccttgagtactcagaccaacaatcccagcaacatgggga |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19105866 |
gaaccattaaccatgatccttgtcatcaacgtaacctccagaaagagcaacaaattgtgcgccttgagtactcagaccaacaatcccagcaacatgggga |
19105767 |
T |
|
| Q |
401 |
ccggaaaat |
409 |
Q |
| |
|
||||||||| |
|
|
| T |
19105766 |
ccggaaaat |
19105758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 8 - 400
Target Start/End: Original strand, 43192911 - 43193303
Alignment:
| Q |
8 |
aacaaaatatcatactaattcatcacataactttacaatgaaactaagctaatatggaaacaatcaatcaattgaattt--attaataaaaacagaccta |
105 |
Q |
| |
|
||||||||| ||||| ||||| ||||||| | ||||||||||||| | |||| |||| |||| ||||| |||| || || |||||||||||| ||| |
|
|
| T |
43192911 |
aacaaaatagcataccaattcctcacatatc---acaatgaaactaaccaaataaggaatcaattaatcagttgatttataatcaataaaaacagatcta |
43193007 |
T |
|
| Q |
106 |
acaaactgagaaggaatgcatcagttgaatt-aattcataatgagtaaaaattgacctaaaaacacaaacaggacaacctttttggcaacatagtcttaa |
204 |
Q |
| |
|
||||||| | ||| ||| |||||||||||| |||||||||| | |||||| ||||||| ||||| ||||||| | |||||| |||||| || || |
|
|
| T |
43193008 |
acaaactaataagaaatcgatcagttgaattgaattcataataaataaaaacagacctaacaacacgaacaggatagccttttcggcaactggttcgcaa |
43193107 |
T |
|
| Q |
205 |
agcctcaatcatattctcaaactgctgatcgaaagactggtttttgttggtacgcttgttaccactgagatcccttccacaacttccagtataaaggaac |
304 |
Q |
| |
|
||||||| ||||||| ||||||| ||| || || |||||||||||||| || || || || ||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
43193108 |
agcctcattcatattttcaaacttctggtcaaatgactggtttttgttcgtgcgtttattcccactgagatcccttccaccgcttccagtgtaaaggaac |
43193207 |
T |
|
| Q |
305 |
cattaaccatgatccttgtcatcaacgtaacctccagaaagagcaacaaattgagcgccttgagtactcagaccaacaatcccagcaacatgggga |
400 |
Q |
| |
|
|| | || ||||| | ||||| | ||||| || || ||||| ||| ||||||| || || | |||| ||||| |||| ||||||||||||||| |
|
|
| T |
43193208 |
cactccccgtgatcttcatcatctatataaccacccgagagagcgacagattgagccccgtgggcactctgaccagcaatgccagcaacatgggga |
43193303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 116 - 399
Target Start/End: Complemental strand, 43194854 - 43194570
Alignment:
| Q |
116 |
aaggaatgcatcagttgaatt-aattcataatgagtaaaaattgacctaaaaacacaaacaggacaacctttttggcaacatagtcttaaagcctcaatc |
214 |
Q |
| |
|
||||||| |||| ||||||| |||||||||| | |||||| ||||||| ||||| ||||||| |||||||| | |||| ||||| | ||||||| || |
|
|
| T |
43194854 |
aaggaatcaatcaattgaattgaattcataatcaataaaaacggacctaacaacacgaacaggataaccttttcgacaactcagtctgagagcctcattc |
43194755 |
T |
|
| Q |
215 |
atattctcaaactgctgatcgaaagactggtttttgttggtacgcttgttaccactgagatcccttccacaacttccagtataaaggaaccattaaccat |
314 |
Q |
| |
|
|| ||||||||||| ||||| |||||||| |||||||| ||||| || ||||| |||||||| || || | |||||| || ||||||||||| | ||| | |
|
|
| T |
43194754 |
atgttctcaaactgttgatcaaaagactgatttttgtttgtacgtttattaccgctgagatctctcccgccacttcctgtgtaaaggaaccactcaccgt |
43194655 |
T |
|
| Q |
315 |
gatccttgtcatcaacgtaacctccagaaagagcaacaaattgagcgccttgagtactcagaccaacaatcccagcaacatgggg |
399 |
Q |
| |
|
| |||| ||||| || ||||| || ||||| |||||| ||||||| || || |||||| ||||| |||| ||||| || ||||| |
|
|
| T |
43194654 |
ggtcctcatcatcgacataaccacctgaaagtgcaacagattgagccccgtgtgtactctgaccagcaatgccagccacgtgggg |
43194570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 30532610 - 30532553
Alignment:
| Q |
245 |
tttttgttggtacgcttgttaccactgagatcccttccacaacttccagtataaagga |
302 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
30532610 |
tttttattggtacgtttcttaccactgagatcccttccaccacttccggtataaagga |
30532553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 12498226 - 12498189
Alignment:
| Q |
197 |
agtcttaaagcctcaatcatattctcaaactgctgatc |
234 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
12498226 |
agtctcaaagcctcaatcatgttctcaaactgctgatc |
12498189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 30531195 - 30531154
Alignment:
| Q |
261 |
tgttaccactgagatcccttccacaacttccagtataaagga |
302 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
30531195 |
tgttaccactgagatcccttccaccacttctggtataaagga |
30531154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 53672397 - 53672310
Alignment:
| Q |
25 |
attcatcacataactttacaatgaaactaagctaatatggaaacaatcaatcaattgaat---ttattaataaaaacagacctaacaa |
109 |
Q |
| |
|
|||| ||||| ||| | ||||||||||||| ||||| |||| ||||||||||||||||| | || |||||||||| ||||||||| |
|
|
| T |
53672397 |
attcctcacacaacatcacaatgaaactaaaataataaggaatcaatcaatcaattgaattcataatcaataaaaacatacctaacaa |
53672310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University