View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_high_34 (Length: 415)
Name: NF14117_high_34
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 13915082 - 13915470
Alignment:
| Q |
18 |
atgcttgtggaaccaaagcaaactgcatgatgctagtgagtgtatagtcaaattttaaatcaacaagtttaactcgacaccacgcgtagctctgcacaat |
117 |
Q |
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| T |
13915082 |
atgcttgtggaaccaaagcaaactgcatgatgctagtgagtgtatagtcaaattttaaatcaacaagtttaactcgacaccacacgtagctctgcacaat |
13915181 |
T |
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| Q |
118 |
cacacatcacaatacatttcaccatgttcttaccacacatctttgtaacacaacaagtttagcaaaaacattatctgattttatgtttcaatattttaca |
217 |
Q |
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| T |
13915182 |
cacacatcacaatacatttcaccatgttcttaccacacatctttgtaacacaacaagtttagcaaaaacattatctgattttatgtttcaatattttaca |
13915281 |
T |
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| Q |
218 |
atatcaacggaaacttaactattttttctattatacccttaatcatccttttcaatttttatgaataagaatggagtaattagtaaaatgtagtccaaaa |
317 |
Q |
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| T |
13915282 |
atatcaacggaaacttaactattttttctattatacccttaatcatccttttcaatttttatgaataagaatggagtaattagtaaaatgtagtccaaaa |
13915381 |
T |
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| Q |
318 |
gagtgtataatatttttcacaaacctatggtattaattgtattattattttttaatttatgcttcaaaatcttaaaagattagtataat |
406 |
Q |
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| T |
13915382 |
gagtgtataatatttttcacaaacctatggtattaattgtattattattttttaatttatgcttcaaaatcttaaaagattagtataat |
13915470 |
T |
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