View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_high_40 (Length: 389)
Name: NF14117_high_40
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 20479513 - 20479289
Alignment:
| Q |
18 |
agaagtaacaaaaataacaatgaatcatgaaacaggaatgccccgtaaagcagaaaaacacaactgctgctatggctacaccaatacctctgttgaacac |
117 |
Q |
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| T |
20479513 |
agaagtaacaaaaataacaatgaaccatgaaacaggaatgccccgtaaagcagaaaaacacaactgctgctacggctacaccaatacctctgttgaacac |
20479414 |
T |
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| Q |
118 |
caatctaaaggaatcgaaaagaaagaatgtcaactctctgacaccgacaacacggaagctacattgccaatctagcgaaaagtaaatgtgtcaacgataa |
217 |
Q |
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| T |
20479413 |
caatctaaaggaatcgaaaagaaagaatgtcaactctctgacaccgacaacacggaagcaacattgccaatctagcgaaaagtaaatgtgtcaatgataa |
20479314 |
T |
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| Q |
218 |
ctcgtcaaagtagtccaaggatttt |
242 |
Q |
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| T |
20479313 |
ctcgtcaaagtagtccaaggatttt |
20479289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 260 - 379
Target Start/End: Complemental strand, 20478853 - 20478734
Alignment:
| Q |
260 |
tcaatttattagttatatacttcgtattaacctgcaagttgaatcaaaatagaaatccaggttgactgcctaattgcattcttcccgactcccagtccaa |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20478853 |
tcaatttattagttatatacttcgtattaacctgcaagttgaatcaaaatagaaatccaggttgactgcctaattgcattcttcccgactcccagtccaa |
20478754 |
T |
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| Q |
360 |
ctgtctaattgcggcctatg |
379 |
Q |
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| T |
20478753 |
ctgtctaattgcggcctatg |
20478734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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