View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14117_high_42 (Length: 379)
Name: NF14117_high_42
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_high_42 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 14 - 379
Target Start/End: Original strand, 43154566 - 43154931
Alignment:
| Q |
14 |
aataccaatgttatatctgtatgtgacatttgtnnnnnnnntagttgtatggataccattattctttaatatattagagtgatctcagttttttattgta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43154566 |
aataccaatgttatatctgtatgtgacatttgtaaaaaaaatagttgtatggataccattattctttaatatattagagtgatctcagttttttattgta |
43154665 |
T |
|
| Q |
114 |
caatcatcatgtagaaaagataaatatttaattcctacaagccaaagtgaaaattctaagtgtcctaaaatctgagaaacttaaggttaggtaatactaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43154666 |
caatcatcatgtagaaaagataaatatttaattcctacaagccaaagtgaaaattctaagtgtcctaaaatctgagaaacttaaggttaggtaatactaa |
43154765 |
T |
|
| Q |
214 |
taaactactaaataacaagcacaagtgatttatgattctgatcataatcaaaataaaacttattctcagctcttgaatcataacagaaagtagctttcan |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43154766 |
taaactactaaataacaagcacaagtgatttatgattctgatcataatcaaaataaaacttattctcagctcttgaatcataacagaaagtagctttcat |
43154865 |
T |
|
| Q |
314 |
nnnnnngataaaatcctcacatttcttatttagtttctctgtctcatctttatcaattatcatagg |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43154866 |
ttttttgataaaatcctcacatttcttatttagtttctctgtctcatctttatcaattatcatagg |
43154931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 374
Target Start/End: Complemental strand, 43168073 - 43167994
Alignment:
| Q |
295 |
aacagaaagtagctttcannnnnnngataaaatcctcacatttcttatttagtttctctgtctcatctttatcaattatc |
374 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||| || ||||| ||||||| |||||||||| |
|
|
| T |
43168073 |
aacagaaagtagctttcatctttttgataaaatcctcacatttcttgtttaattcttctgtttcatcttcatcaattatc |
43167994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University