View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_high_53 (Length: 331)
Name: NF14117_high_53
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_high_53 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 47207551 - 47207682
Alignment:
| Q |
1 |
ctgccaccggaggtcttatgtttggttacgatgttggagtttcaggtacctaattaattttaacttctttcatgcaataggcttaagtttaaaattcgct |
100 |
Q |
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| T |
47207551 |
ctgccaccggaggtcttatgtttggttacgatgttggagtttcaggtacctaattaattttaactttttacatgcaataggcttaagcttaaaattcgct |
47207650 |
T |
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| Q |
101 |
tcaaacttcaatatgtgtttggcccgtccttc |
132 |
Q |
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| T |
47207651 |
tcaaacttcaatatgtgtttggccggtccttc |
47207682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 192 - 316
Target Start/End: Original strand, 47207742 - 47207867
Alignment:
| Q |
192 |
gtactattttcttgtgaaaagcggagtactccaatttcgctagtgtaagagtagtataaaaatttgagcattgctnnnnnnncatatcttataatggatg |
291 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47207742 |
gtactattttcttatgaaaagcggagtactccaatttcgctagtgtaagagtagtataaaaatttgagcattgctaacaaaacatatcttataatggatg |
47207841 |
T |
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| Q |
292 |
a-tttggttggtttaattgttttaag |
316 |
Q |
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| T |
47207842 |
attttggttggtttaattgttttaag |
47207867 |
T |
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