View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14117_high_64 (Length: 292)
Name: NF14117_high_64
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_high_64 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 48535987 - 48536263
Alignment:
| Q |
13 |
aatatcaaaagcatgcataacgagataaactaaaatagaaatgaatgaacttgaaatccaataaacagctaaaagcttaacttagagtttgttttgtttg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48535987 |
aatatcaaaagcatgcataacgagataaactaaaatagaaatgaatgaacttgaaatccaataaacagctaaaagcttaacttagagtttgttttgtttg |
48536086 |
T |
|
| Q |
113 |
ttccatgaaccaaccaacaataacaagacatactatactggaatgcttttataaacagcctaaaccaaagaacaacgtaacaacagaactaggctaggct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48536087 |
ttccatgaaccaaccaacaataacaagacatactatactggaatgcttttataaacagcctaaaccaaagaacaacgtaacaacagaactaggctaggct |
48536186 |
T |
|
| Q |
213 |
ggtgctggtgctgttgccggtggcgccacagttgagaggatgtaagttaccacagtgaataatattgaacataagccaca |
292 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48536187 |
ggtgctggtgctgttgccggtggcgctacagttgagaggatgtaagttaccacagtgaataata---aacataagccaca |
48536263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 48533165 - 48533247
Alignment:
| Q |
98 |
agtttgttttgtttgttccatgaacc-aaccaacaataac---aagacatactatactggaatgcttttataaacagcctaaa |
176 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| || | |||||||||| ||||||||||| |||||||||||| |
|
|
| T |
48533165 |
agtttgttttgtttgttccatgaaccaaaccaacaataacaaaaacatatactatactagaatgcttttagaaacagcctaaa |
48533247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University