View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_high_7 (Length: 649)
Name: NF14117_high_7
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 8e-72; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 21035809 - 21036042
Alignment:
| Q |
20 |
caacaaaaggaatcggggatttcttcttcgtgttcatcgtgatcaaggtttttcaatgctgtgttctccattttctggattttctctgaaagcagagaga |
119 |
Q |
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| T |
21035809 |
caacaaaaggaatctgggatttcttcttcatgttcatcgtgatcaaggtttttcaatgctgtgttctccattttctggattttctctgaaagcagagaga |
21035908 |
T |
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| Q |
120 |
gggaannnnnnnnnnnnnnnnnngagaagagagagagggaatttagaatctaagaaattgtacacgaagaacgttgttcaatgttcaatatttaatattt |
219 |
Q |
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| T |
21035909 |
gggaa--atttttttttttttttgagaggagagagagggaatttagaatctaag-aactgtacacaaagaacgttgttcaatgttcaatatttaatattt |
21036005 |
T |
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| Q |
220 |
gattattagcattggaaatataacacgaaggttttag |
256 |
Q |
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| T |
21036006 |
gactattagcattggaaatataatatgaaggttttag |
21036042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 331 - 483
Target Start/End: Original strand, 21036136 - 21036289
Alignment:
| Q |
331 |
tcacgaggatgaagattttagttaattacaatttcattgttgttttaaggtttttgatttagactaaagataattaataaatgaacaattt--tnnnnnn |
428 |
Q |
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| T |
21036136 |
tcacgaggacgaaggttttagttaattacaatctcattgttattttaaggttttagatttagactaaagataattaataaatgaacaatttaaaaaaaaa |
21036235 |
T |
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| Q |
429 |
nntagttattgcttccaaaacaaataagttcttcaaacaaaattagcttttgtca |
483 |
Q |
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| T |
21036236 |
attagttattgcttccaaaaaaaattagttcttcaaa-aaaattagtttttgtca |
21036289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 21050855 - 21050931
Alignment:
| Q |
20 |
caacaaaaggaatcggggatttcttcttcgtgttcatcgtgatcaaggtttttcaatgctgtgttctccattttctg |
96 |
Q |
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| T |
21050855 |
caacaaaaggaatcggggatttcttcttcatgttcatcgtgatcaacgtgtttcaatgttgtgttctccattttctg |
21050931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 578 - 643
Target Start/End: Original strand, 21036392 - 21036457
Alignment:
| Q |
578 |
tgttccgattcatagaggaaaaagctctactaattcgaaatttcattggaggttgagtataatcta |
643 |
Q |
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| T |
21036392 |
tgttccgattcatagaggaaaaagctctagtaattcgaaattttgtcggaggttgagtaaaatcta |
21036457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 21050981 - 21051016
Alignment:
| Q |
181 |
acacgaagaacgttgttcaatgttcaatatttaata |
216 |
Q |
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| T |
21050981 |
acacgaagaacgttgttcaatgttcaatgtttaata |
21051016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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