View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_high_75 (Length: 250)
Name: NF14117_high_75
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_high_75 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 50390034 - 50389796
Alignment:
| Q |
1 |
attagcacctatgcaaatgtaaagacacatttgccaaacatgtggtcttgcaannnnnnnngttatggataaccaaatcatgaagtaaccaaagaaatta |
100 |
Q |
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| T |
50390034 |
attagcacctatgcaaatgtaaagacacatttgccaaacatgtggtcttgcaattttttttgttatggataaccaaatcatgaagtaaccaaagaaatta |
50389935 |
T |
|
| Q |
101 |
agtatagcacctattgctaaaactacccaaggtggagagatttcgttgattagtcctgcaaggataccaacattgctaccaaaatctttgaaaaaactaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50389934 |
agtatagcacctattgctaaaactacccaaggtggagagatttcgttgattagtcctgcaaggataccaacattgctaccaaaatctttgaaaaaactaa |
50389835 |
T |
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| Q |
201 |
ggaggtctagtgtgctttggtcatagccaagtgtttctt |
239 |
Q |
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| T |
50389834 |
ggaggtctagtgtgctttggtcatagccaagtgtttctt |
50389796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 50393308 - 50393074
Alignment:
| Q |
1 |
attagcacctatgcaaatgtaaagacacatttgccaaacatgtggtcttgcaannnnnnnngttatggataaccaaatcatgaagtaaccaaagaaatta |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||| | ||||||||| | || | |||||||||||||| ||||||||||| || || |
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| T |
50393308 |
attagcacctatacaaatgtaaagacacatttgccaaacttttggtcttgctatttttttggtgactgataaccaaatcataaagtaaccaaaaaagttt |
50393209 |
T |
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| Q |
101 |
agtatagcacctattgctaaaactacccaaggtggagagatttcgttgattagtcctgcaaggataccaacattgctaccaaaatctttgaaaaaactaa |
200 |
Q |
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| T |
50393208 |
agtatagcacctattgttaaaactacccaaggtggatagagttcgttgactagtcctgcaaggacaccaacgttgctaccaaaatctttgaaaaaactaa |
50393109 |
T |
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| Q |
201 |
ggaggtctagtgtgctttggtcatagccaagtgtt |
235 |
Q |
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| T |
50393108 |
ggaggtttagtgtgctttggtcatagccaagtgtt |
50393074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 50384889 - 50384655
Alignment:
| Q |
1 |
attagcacctatgcaaatgtaaagacacatttgccaaacatgtggtcttgcaannnnnnnngttatggataaccaaatcatgaagtaaccaaagaaatta |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||| | || | |||||||||||||||||||||||||||||||| |
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| T |
50384889 |
attagcacctatacaaatgtaaagacacatttgccaaacttgtggtcttgctatttttttggtaactgataaccaaatcatgaagtaaccaaagaaattg |
50384790 |
T |
|
| Q |
101 |
agtatagcacctattgctaaaactacccaaggtggagagatttcgttgattagtcctgcaaggataccaacattgctaccaaaatctttgaaaaaactaa |
200 |
Q |
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|| ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| ||||| |||||| ||||||||||| |||||||||||||||| |
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| T |
50384789 |
agaatagcacctattgtcaaaactacccaaggtggatagagttcgttgattagtcctgaaaggacaccaacgttgctaccaaagtctttgaaaaaactaa |
50384690 |
T |
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| Q |
201 |
ggaggtctagtgtgctttggtcatagccaagtgtt |
235 |
Q |
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|||||| ||||| ||||||||||||||||||||| |
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| T |
50384689 |
ggaggttcagtgtactttggtcatagccaagtgtt |
50384655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 50406921 - 50406883
Alignment:
| Q |
1 |
attagcacctatgcaaatgtaaagacacatttgccaaac |
39 |
Q |
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| T |
50406921 |
attagcacctatacaaatgtaaagacacatttgccaaac |
50406883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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