View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_high_84 (Length: 237)
Name: NF14117_high_84
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_high_84 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5032991 - 5033215
Alignment:
| Q |
1 |
aaaacggcactatttgtaaaaggattagggaaaatctaaaacagtgtcgttaattagtgcgatgaaaccttccataacgattgtaaccnnnnnnnnnnnn |
100 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5032991 |
aaaaaggcactatttgtaaaaggattagggaaaatctaaaacagtgtcgttaattagtgcgatgaaaccttccataacgattgtaaccaaaaaaaaaaaa |
5033090 |
T |
|
| Q |
101 |
nn--cttccataacgacaacaactatttgattccttttacacataacataaatactctaatagggacagggatatctattatctattagggttttataga |
198 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
5033091 |
aaaccttccataaggacaacaactatttgattccttttacacataacataaatactctaatagggacagggatatctattatccattagggttttataga |
5033190 |
T |
|
| Q |
199 |
aaaataaagactccttatattttgt |
223 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
5033191 |
aaaataaagactccttatattttgt |
5033215 |
T |
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