View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_1 (Length: 918)
Name: NF14117_low_1
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 795; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 795; E-Value: 0
Query Start/End: Original strand, 14 - 898
Target Start/End: Complemental strand, 9301143 - 9300261
Alignment:
| Q |
14 |
caatatccatattctttgtgcgagcatgaagaataggattgagctaatagactgagatacttgctatgaatgagcaaaagtgtaccattagactgctttt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9301143 |
caatatccatattctttgtgcgagcatgaagaataggattgagctaatagactgagatacttgctatgaatgagcaaaagtgtaccattagactgttttt |
9301044 |
T |
|
| Q |
114 |
taacttcaacaccaagaaaatagttaagatcaccaacgtgcttaagtgagaaggtagcattgagctaatagactatgctgagaacaaaataagtggagct |
213 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9301043 |
taacttcaacaccaagaaaatagtcaagatcaccaacgtgcttaagtgagaaggtagcattgagctaatagactacgctgagaacaaaataagtggagct |
9300944 |
T |
|
| Q |
214 |
cgcagtgatgataatatcatcaacatacacttagagaggtaaactatatgatgttaatagtatatctgaagagggagggattgctatcctaaaaacccaa |
313 |
Q |
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| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9300943 |
cccagtgatgataatatcatcaacatacacttcgag--gtaaactatatgatgttaatagtatatctgaagagggagggattgctatcctaaaaacccaa |
9300846 |
T |
|
| Q |
314 |
agacaataaggtggttttgagtctctcaaaccattgtctaggagcttgctcgaggccatagagagccttgttgagtttacaaacaagtgaagggtgtgaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9300845 |
agacaataaggtggttttgagtctctcaaaccattgtctaggagcttgctcgaggccatagagagccttgttgagtttacaaacaagttaagggtgtgaa |
9300746 |
T |
|
| Q |
414 |
gattcaaagccttggggttcttgcacgtacacttcctcattcaagttgccatttaagaaggcattatttacatcaagttgatgaatagtctagttgtagg |
513 |
Q |
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| T |
9300745 |
gattcaaagccttggggttgttgcacgtacacttcctcattcaagttgccatttaagaaggcattatttacatcaagttgatgaatagtctagttgtagg |
9300646 |
T |
|
| Q |
514 |
aaatagcaagagagaggacaagtctgatgatgacaagttcgatgacatggtagaatgtctca-taaaatcaaaatcttgcagttggtgaaaccctttagc |
612 |
Q |
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|||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9300645 |
aaatagcaagagagaggaaaagtctgatggtgacaagtttgatgacatggtagaatgtctcattaaaatcaaaatcttgcagttggtgaaaccctttagc |
9300546 |
T |
|
| Q |
613 |
cactaaacgtgcattgagcctattgacgccatcaacattttctttgactctgaatacccatttgcatcctatatatggcggttctttttgttgggagaga |
712 |
Q |
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| T |
9300545 |
cactaaacgtgcattgagcctattgactccatcaacattttctttgactctgaatacccatttgcatcctatatatggcggttctttttgttgggagaga |
9300446 |
T |
|
| Q |
713 |
aacccaatcccaagtgttatttctttctaatgaatcaaactcttcttgcatagtagcatgccattgggggtttatagagtgcttgtttagcaattttaga |
812 |
Q |
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| T |
9300445 |
aaccccatctcaagtgttatttctttctaatgaatcaaactcttcttgcatagtagcatgccatt-ggggtttatagagtgcttgtttagcaattttaga |
9300347 |
T |
|
| Q |
813 |
ttcatagtaagtaacaaagtgggcttcagtctaggctgcacaatgccagacttggctctagtcctcataggatgatcattagtgag |
898 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9300346 |
ttcatagtaaggaacaaagtgggcttcagtctaggctgcacaaagccagacttggctctagtcctcataggacgatcattagtgag |
9300261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 339 - 505
Target Start/End: Complemental strand, 3218995 - 3218829
Alignment:
| Q |
339 |
tcaaaccattgtctaggagcttgctcgaggccatagagagccttgttgagtttacaaacaagtgaagggtgtgaagattcaaagccttggggttcttgca |
438 |
Q |
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||||||||||| |||||||| || | ||||||||| | || |||||||||||| |||||||| || || | || || ||||||||||| |||| ||||| |
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| T |
3218995 |
tcaaaccattgcctaggagcctgtttgaggccatataaagtcttgttgagtttgcaaacaagagatggataagaggactcaaagccttgtggttgttgca |
3218896 |
T |
|
| Q |
439 |
cgtacacttcctcattcaagttgccatttaagaaggcattatttacatcaagttgatgaatagtcta |
505 |
Q |
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||| ||||| ||| | | ||||||||||||| |||||||| ||||| ||||| ||||||||||| |
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| T |
3218895 |
tgtatacttcttcaccaagggtgccatttaagaaagcattattaacatctagttgctgaatagtcta |
3218829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 462 - 525
Target Start/End: Original strand, 32457892 - 32457955
Alignment:
| Q |
462 |
ccatttaagaaggcattatttacatcaagttgatgaatagtctagttgtaggaaatagcaagag |
525 |
Q |
| |
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| T |
32457892 |
ccatttaagaaggcattattgacatccagctgttgaataggccacttgtaggaaatagcaagag |
32457955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 339 - 382
Target Start/End: Complemental strand, 39581908 - 39581865
Alignment:
| Q |
339 |
tcaaaccattgtctaggagcttgctcgaggccatagagagcctt |
382 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39581908 |
tcaaaccattgtctaggagcttgcttgaggccatagagagcctt |
39581865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 342 - 376
Target Start/End: Original strand, 3212848 - 3212882
Alignment:
| Q |
342 |
aaccattgtctaggagcttgctcgaggccatagag |
376 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
3212848 |
aaccattgtctaggagcttgcttgaggccatagag |
3212882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 339 - 382
Target Start/End: Original strand, 6870254 - 6870297
Alignment:
| Q |
339 |
tcaaaccattgtctaggagcttgctcgaggccatagagagcctt |
382 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6870254 |
tcaaaccattgtctaggagcttgcttgaggccatagagagcctt |
6870297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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