View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14117_low_10 (Length: 620)

Name: NF14117_low_10
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14117_low_10
NF14117_low_10
[»] chr3 (6 HSPs)
chr3 (10-428)||(9123100-9123516)
chr3 (10-428)||(9131207-9131623)
chr3 (527-602)||(9122865-9122940)
chr3 (527-602)||(9130972-9131047)
chr3 (478-528)||(9123039-9123089)
chr3 (478-528)||(9131146-9131196)
[»] chr4 (3 HSPs)
chr4 (10-395)||(24524997-24525384)
chr4 (543-602)||(24524826-24524885)
chr4 (440-490)||(24524921-24524967)
[»] chr5 (3 HSPs)
chr5 (155-292)||(9038960-9039096)
chr5 (10-53)||(39814978-39815021)
chr5 (234-275)||(39815109-39815150)


Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 10 - 428
Target Start/End: Complemental strand, 9123516 - 9123100
Alignment:
Q  10 agaagcaaagggaagctgctaaattgatgatacaaagcataaaaagaacggcgtttattgatgataatttgttgtcttataacgagctggagaatctgtg 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9123516 agaaacaaagggaagctgctaaattgatgatacaaagcataaaaagaacggcgtttattgatgataatttgttgtcttataacgagctggagaatctgtg 9123417  T
Q  110 tggtcattcattgcaagattgcaacaagttgaatccattgaagacatttgtagggttggttctaaaggatgagataatgggagttacagatttgaacgag 209  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||    
T  9123416 cggtcattcattgcaagattgcaacaagttgaatccattgaagacatttgtagggttggttctaaaggatgatattatgggagttacagatttgaatgag 9123317  T
Q  210 gagaaatttcttagcagagattgggaagaaggagaaattatcattctcgattaattagctttttatcgataggaatgattgcagctgattgtaatgcatg 309  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||| ||     
T  9123316 gagaaatttcttaacagagattgggaagaaggagaaattatcattctcgattaattagctttttatatttaggaatgactgcagctgattgtaatgtat- 9123218  T
Q  310 tattataggaaggaactgtcatgtaagaaattatattcatattcaatatatataatgaaattttatccactcattattcctcaattacttgtctggttta 409  Q
    ||| | ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  9123217 tatcaaaggaaggaact-tcatgtaagaatttatattcatattcaatatatataatgaaattttatccactcattattcctcaattgcttgtctggtttc 9123119  T
Q  410 tttatcactgccaacgtct 428  Q
    ||||| |||||||||||||    
T  9123118 tttattactgccaacgtct 9123100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 10 - 428
Target Start/End: Complemental strand, 9131623 - 9131207
Alignment:
Q  10 agaagcaaagggaagctgctaaattgatgatacaaagcataaaaagaacggcgtttattgatgataatttgttgtcttataacgagctggagaatctgtg 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9131623 agaaacaaagggaagctgctaaattgatgatacaaagcataaaaagaacggcgtttattgatgataatttgttgtcttataacgagctggagaatctgtg 9131524  T
Q  110 tggtcattcattgcaagattgcaacaagttgaatccattgaagacatttgtagggttggttctaaaggatgagataatgggagttacagatttgaacgag 209  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||    
T  9131523 cggtcattcattgcaagattgcaacaagttgaatccattgaagacatttgtagggttggttctaaaggatgatattatgggagttacagatttgaatgag 9131424  T
Q  210 gagaaatttcttagcagagattgggaagaaggagaaattatcattctcgattaattagctttttatcgataggaatgattgcagctgattgtaatgcatg 309  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||| ||     
T  9131423 gagaaatttcttaacagagattgggaagaaggagaaattatcattctcgattaattagctttttatatttaggaatgactgcagctgattgtaatgtat- 9131325  T
Q  310 tattataggaaggaactgtcatgtaagaaattatattcatattcaatatatataatgaaattttatccactcattattcctcaattacttgtctggttta 409  Q
    ||| | ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  9131324 tatcaaaggaaggaact-tcatgtaagaatttatattcatattcaatatatataatgaaattttatccactcattattcctcaattgcttgtctggtttc 9131226  T
Q  410 tttatcactgccaacgtct 428  Q
    ||||| |||||||||||||    
T  9131225 tttattactgccaacgtct 9131207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 527 - 602
Target Start/End: Complemental strand, 9122940 - 9122865
Alignment:
Q  527 ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatat 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9122940 ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatat 9122865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 527 - 602
Target Start/End: Complemental strand, 9131047 - 9130972
Alignment:
Q  527 ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatat 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9131047 ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatat 9130972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 478 - 528
Target Start/End: Complemental strand, 9123089 - 9123039
Alignment:
Q  478 attatcagttactcttgtagatattactgccaatgtctttatttgatgttt 528  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  9123089 attatcagttactcttatagttattactgccaatgtctttatttgatgttt 9123039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 478 - 528
Target Start/End: Complemental strand, 9131196 - 9131146
Alignment:
Q  478 attatcagttactcttgtagatattactgccaatgtctttatttgatgttt 528  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  9131196 attatcagttactcttatagttattactgccaatgtctttatttgatgttt 9131146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 395
Target Start/End: Complemental strand, 24525384 - 24524997
Alignment:
Q  10 agaagcaaagggaagctgctaaattgatgatacaaagcataaaaagaacggcgtttattgatgataatttgttgtcttataacgagctggagaatctgtg 109  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24525384 agaaacaaagagaagctgctaaattgatgatacaaagcataaaaagaacggcgtttattgatgataatttgttgtcttataacgagctggagaatctgtg 24525285  T
Q  110 tggtcattcattgcaagattgcaacaagttgaatccattgaagacatttgtagggttggttctaaaggatgagataatgggagttacagatttgaacgag 209  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |  |||||||| |||    
T  24525284 cggtcattcattgcaagattgcaacaagttgaatccattgaagacatttgtagggttggttctaaaggatgagattatgggagtgaatgatttgaatgag 24525185  T
Q  210 gagaaatttcttagcagagattgggaagaaggagaaattatcattctcgattaattagctttttatcgataggaatgattgcagctgattgtaatgcatg 309  Q
    ||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||| |||| |||  ||||||||    
T  24525184 gagaagtttcttaacagagattgggaagatggagaaattatcattctcgattaattagctttttatctttaggaatgattgtagctaattacaatgcatg 24525085  T
Q  310 tatt---ataggaaggaactgtcatgtaagaaattatattcatattcaatatatataatgaaattttatccactcattattcctcaatt 395  Q
    ||||   ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24525084 tattatcataggaaggaact-tcatgtaagaaattatattcatattcaatatatataatgaaattttatccactcattattcctcaatt 24524997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 543 - 602
Target Start/End: Complemental strand, 24524885 - 24524826
Alignment:
Q  543 tttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatat 602  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24524885 tttgtttttgcaactagaaaggttcattgctgatatcaaagaggggttattggttaatat 24524826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 490
Target Start/End: Complemental strand, 24524967 - 24524921
Alignment:
Q  440 atatcaagtcactgcaactcatactatatagatggtcaattatcagttact 490  Q
    |||| ||||||||||||||||||    ||||||||||||||||||||||||    
T  24524967 atatgaagtcactgcaactcata----atagatggtcaattatcagttact 24524921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 155 - 292
Target Start/End: Original strand, 9038960 - 9039096
Alignment:
Q  155 atttgtagggttggttctaaaggatgagataatgggagttacagatttgaacgaggagaaatttcttagcagagattgggaagaaggagaaattatcatt 254  Q
    |||||| ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  9038960 atttgtggggttggttttaaaggatgagattatgggagtgacagatttgaacgaggagaaatttcttaacaga-attgggaagaaggagaaattatcatt 9039058  T
Q  255 ctcgattaattagctttttatcgataggaatgattgca 292  Q
    ||||||||||||| ||||||||  ||||||||| ||||    
T  9039059 ctcgattaattagttttttatctttaggaatgactgca 9039096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 39814978 - 39815021
Alignment:
Q  10 agaagcaaagggaagctgctaaattgatgatacaaagcataaaa 53  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  39814978 agaaacaaagggaagctgctaaattgatgatacaaagcataaaa 39815021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 234 - 275
Target Start/End: Original strand, 39815109 - 39815150
Alignment:
Q  234 gaagaaggagaaattatcattctcgattaattagctttttat 275  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  39815109 gaagaaggagaagttatcattctcgattaattagctttttat 39815150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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