View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_11 (Length: 609)
Name: NF14117_low_11
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Original strand, 22054392 - 22054920
Alignment:
| Q |
1 |
taagtaggaattgattgcaatacaaaattgatcattacctctcggtctaccttagataaacacttactactacacaaattaaaannnnnnn-cttccaaa |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||| |
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| T |
22054392 |
taagtaggaattgattgcaatacaaaattgatcattacctctcggtctaccttagatgaacacttactgctacacaaattaattttttttttcttccaaa |
22054491 |
T |
|
| Q |
100 |
ttcgatctttgataaagctaaaagttcctgacttattcgtcttaatctagatggtagcccgaggtacttactagtaaataaaattgcatgtacacccaaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||| ||||||||||||||| |||||||| ||||||||||||||| |
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|
| T |
22054492 |
ttcgatctttgataaagctaaaagttcccgacttattcctcttaatcaagatggtagcttgaggtacttactagttaataaaatcgcatgtacacccaaa |
22054591 |
T |
|
| Q |
200 |
taattagtaattgaattttgaagagtttgagaaaaatttctgcaacaacatatttctgac-tttggtagactta-agcttaaccagacactactttctat |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||| |
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| T |
22054592 |
taattagtaattgaattttgaagagtttgagaaaaatttctgcaacaacatatttctgacttttggtagacttagagcttaaccagacactgctttctat |
22054691 |
T |
|
| Q |
298 |
tgtggataaatctaaccatgctt-----------gttggttagtagagcaaataactcaacttagtctaataagtactttgttttgtattcatttgatag |
386 |
Q |
| |
|
|||||||||||||||| ||| || ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22054692 |
tgtggataaatctaactatgtttgtggttagttagttggcttgtagagcaaataactcaacttagtctaataagtactttgttttgtattcatttgatag |
22054791 |
T |
|
| Q |
387 |
aattcatatcacacataaatatcttgtatcataaatactatgcaatacaattcaccataaacaaaactctcttcatcctctctattcttaacatagatct |
486 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
22054792 |
aattcatatcacacattaatatcttgtatcataaccactatgcaatacaattcaccataaacaaaactctcttcatcctctctattcttaacacagatct |
22054891 |
T |
|
| Q |
487 |
gaacgttctgaactctctcatttctctta |
515 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
22054892 |
gaacgttctgaactctctcatttctctta |
22054920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 432 - 534
Target Start/End: Complemental strand, 29298491 - 29298389
Alignment:
| Q |
432 |
tacaattcaccataaacaaaactctcttcatcctctctattcttaacatagatctgaacgttctgaactctctcatttctcttatcattgagtgtaagca |
531 |
Q |
| |
|
|||||||||| || ||||||| ||||||||||||||| ||||| |||||| | ||||||| |||||| |||| ||||||| ||||||||||||||||| |
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|
| T |
29298491 |
tacaattcactatcaacaaaaatctcttcatcctctcaattctcaacataaaatagaacgttttgaactttctcctttctctcatcattgagtgtaagca |
29298392 |
T |
|
| Q |
532 |
tca |
534 |
Q |
| |
|
||| |
|
|
| T |
29298391 |
tca |
29298389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 420
Target Start/End: Complemental strand, 29298609 - 29298518
Alignment:
| Q |
329 |
gtagagcaaataactcaacttagtctaataagtactttgttttgtattcatttgatagaattcatatcacacata--aatatcttgtatcataa |
420 |
Q |
| |
|
||||||||| ||||||||||||| ||| ||||||||| |||||||||||| |||||| || |||||| ||||| ||||| ||||||||||| |
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|
| T |
29298609 |
gtagagcaagtaactcaacttagccta-taagtactt-gttttgtattcaattgatataactcatatattacatatcaatatattgtatcataa |
29298518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 437 - 528
Target Start/End: Original strand, 33829720 - 33829810
Alignment:
| Q |
437 |
ttcaccataaacaaaactctcttcatcctctctattcttaacatagatctgaacgttctgaactctctcatttctcttatcattgagtgtaa |
528 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | | || || ||||||| |||||||||| ||||||||||||| || |||||| |
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|
| T |
33829720 |
ttcaccataaacaaaactctcttcatcctctctattctcattacagttcagaacgttttgaactctct-atttctcttatcagtgtgtgtaa |
33829810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 432 - 529
Target Start/End: Original strand, 930021 - 930117
Alignment:
| Q |
432 |
tacaattcaccataaacaaaactctcttcatcctctctattct--taacatagatctgaacgttctgaactctctcatttctcttatcattgagtgtaag |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||||| || ||||||||||||| ||||| ||||||| |||| |||||||||| |
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|
| T |
930021 |
tacaattcaccataaacaaaactctcttcatcttctctattctcataacata-at-agaacgttctgaacgctctc-tttctctcatcagtgagtgtaag |
930117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 423 - 458
Target Start/End: Complemental strand, 6600666 - 6600631
Alignment:
| Q |
423 |
actatgcaatacaattcaccataaacaaaactctct |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
6600666 |
actatgcaatacaattcaccataaacaaaactctct |
6600631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 488 - 534
Target Start/End: Complemental strand, 6600609 - 6600563
Alignment:
| Q |
488 |
aacgttctgaactctctcatttctcttatcattgagtgtaagcatca |
534 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
6600609 |
aacgttctgaactctctattttctctcatcattgagtgtaagcatca |
6600563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 432 - 531
Target Start/End: Original strand, 4659763 - 4659862
Alignment:
| Q |
432 |
tacaattcaccataaacaaaactctcttcatcctctctattcttaacatagatctgaacgttctgaactctctcatttctcttatcattgagtgtaagca |
531 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||| | || | | | |||| || ||||| |||| ||||||| |||| |||||||||||| |
|
|
| T |
4659763 |
tacaattcaccataaacaaaactctattcatcctcattattctcatcacataacagaacatttggaactatctcttttctctcatcagtgagtgtaagca |
4659862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 435 - 534
Target Start/End: Original strand, 3730894 - 3730990
Alignment:
| Q |
435 |
aattcaccataaacaaaactctcttcatcctctctattcttaacatagatctgaacgttctgaactctctcatttctcttatcattgagtgtaagcatca |
534 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| || | | | ||||||||| || |||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
3730894 |
aattcaccataaacaaaactctcttcatcctcttcgatct---cacaaaacagaacgttctaaattctctcttttctctcatcattgaatgtaagcatca |
3730990 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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