View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_13 (Length: 601)
Name: NF14117_low_13
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 10 - 583
Target Start/End: Complemental strand, 45123629 - 45123059
Alignment:
| Q |
10 |
tagataattctcatctttagtttacactgttaaatattgtactcttctctctgagatgaagaccgttaaaaatacatttaatcaatacatcatcactaat |
109 |
Q |
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| T |
45123629 |
tagataattgtcatcttt---ttacactgtcaaatattgtactattctctctgagatgaagaccgttaaaaatacatttaatcaatacatcatcactaat |
45123533 |
T |
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| Q |
110 |
attcataatattctgtaatagacattcatagaaggatacatttgagaaacatttttcatagttgaagacaaaattgtgttggaaaagatcaacatagaga |
209 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45123532 |
attcataatattttgtaatagacattcatagaaggatatatttgagaaacatttttcatagttgaagacaaaattgtgttggaaaagatcaacatagaga |
45123433 |
T |
|
| Q |
210 |
aaataaagaaacacaatcacaacataggtggaaacttcaaaaagcggagacgaaactatgatcattgtccaataacaactagaaaataatactatatgca |
309 |
Q |
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| T |
45123432 |
aaataaagaaacacaatcacaacataggtagaaacttcaaaaagcggagacgaaactatgatcattgtccaatgacaactagaaaataatactatatgca |
45123333 |
T |
|
| Q |
310 |
aacttttacaacacatagactagtcaaacactccattgatcccggtacacccacaatctccaaagcaataccaaactatatctacaacactctaccgcaa |
409 |
Q |
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| T |
45123332 |
aacttttacaacacatagactagtcaaacactccattgaccccgatacacccacaatctccaaagcaataccaaactatatctacaacactctaccgcaa |
45123233 |
T |
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| Q |
410 |
gagtataatagaaaagataaaattcatatatatacttaaaatatttctgactgatgcatcttgaaatacagaaatcgagcttatatataagtatcacttt |
509 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45123232 |
gagtataatagaaaagataaaattcagatatatacttaaaatatttctgattgatgtatcttgaaatacagaaatcgagcttatatataggtatcacttt |
45123133 |
T |
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| Q |
510 |
gtttgttttgcacttcaagaaacaatattgtcacctacaagacttgtcaagcaataaagtaaataagtggagga |
583 |
Q |
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| T |
45123132 |
gtttgtcttgcacttcaagaaacaatattgtcacctacaagacttgtcaagcaataaagtaaacaagtggagga |
45123059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 22190644 - 22190691
Alignment:
| Q |
273 |
attgtccaataacaactagaaaataatactatatgcaaacttttacaa |
320 |
Q |
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| T |
22190644 |
attgtccaatgacaactagagaataacactatatgcaaatttttacaa |
22190691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 498
Target Start/End: Original strand, 35397399 - 35397486
Alignment:
| Q |
411 |
agtataatagaaaagataaaattcatatatatacttaaaatatttctgactgatgcatcttgaaatacagaaatcgagcttatatata |
498 |
Q |
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| T |
35397399 |
agtataagagaaaaggaaaatgtcacatataaacttaaaatgtttctgactgatgcatcttataataaagaaagagagtttatatata |
35397486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 12467149 - 12467205
Alignment:
| Q |
507 |
tttgtttgttttgcacttcaagaaacaatattgtcacctacaagacttgtcaagcaa |
563 |
Q |
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||||||||| |||||||||||||||||| |||| ||||||| |||| |||||||| |
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| T |
12467149 |
tttgtttgtcttgcacttcaagaaacaagcttgtggcctacaaaacttatcaagcaa |
12467205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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