View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14117_low_14 (Length: 571)
Name: NF14117_low_14
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Complemental strand, 11107757 - 11107294
Alignment:
| Q |
18 |
atacatcttatataaaaaaggaaaataatcaagtgtcggaacatcatttgtttataaaaaacatttattgttaatataattacttttgacttcttnnnnn |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11107757 |
atacaccttatataaaaaaggaaaataatcaagtgtcgggacatcatttgtttataaaaaacatttattgttaatataattacttttgacttcttaaaaa |
11107658 |
T |
|
| Q |
118 |
nnn-ttgatgcannnnnnnnnnacacgtagggtggtgtctatatatcaatctcgtattaaaatttatgnnnnnnnnnagaggaaaatttatgtattgtta |
216 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11107657 |
aaaattgatgcattttttttttacacgtagggtggtgtctatatatcaatctcgtattaaaatttatgtttttttt-agaggaaaatttatgtattgtta |
11107559 |
T |
|
| Q |
217 |
tattgccaaataaatggtcaatgtcttaatagtcttcccggcatttacgttggtaacaccctttgatgttgtagtgggaatgccttatcttattatgttg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11107558 |
tattgccaaataaatggtcaatgtcttaatagtcttcccggcatttacgttggtaacgccctttgatgttgtagtgggaatgccttatgttattatgttg |
11107459 |
T |
|
| Q |
317 |
ttttcttttagagaatcttaatcttgtagagttttattagtattgttgatgataatatcaaaatttagatcagaggaagtttcttttttatgagtagggg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11107458 |
ttttcttttagagaatcttaatcttgtagagttttattagtattgttgatgataatatcaaaatttagatcagaggaagtttcttttttatgagtagggg |
11107359 |
T |
|
| Q |
417 |
aagagttgttttcttgatggaaggggaagagttgttatattctagagacgatagtccatcctttc |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11107358 |
aagagttgttttcttgatggaaggggaagagttgttatattctagagatgatagtccatcctttc |
11107294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University