View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_17 (Length: 528)
Name: NF14117_low_17
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 35 - 245
Target Start/End: Complemental strand, 33626896 - 33626685
Alignment:
| Q |
35 |
gtttataagttacgaatgtaagtcgcaatccatgattcagacgaaattatgaaaatgctctctcacaaaatgacacttaagaaatgatgcagtataaaga |
134 |
Q |
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| T |
33626896 |
gtttataagttacgaatgtaagtcgcaatccatgattcagatgaaattatgaaaatgctctctcacaaaatgacacttaagaaatgatgcagtataaaga |
33626797 |
T |
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| Q |
135 |
tctaacacaatgacatgaagacataaaacttgccagtcgtaaactcatggtaaaattttagataacctt-gtcaagaatttcgacgtgtaaaatctaaga |
233 |
Q |
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| T |
33626796 |
tctaacacaatgacatgaagacataaaacttgccagtcgtagactcatggtaaaatttgagataaccttagtcaagaatttcgacgtgtaaaatctaaga |
33626697 |
T |
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| Q |
234 |
taatccaacgtt |
245 |
Q |
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|||||||||||| |
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| T |
33626696 |
taatccaacgtt |
33626685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 245 - 379
Target Start/End: Complemental strand, 33626526 - 33626380
Alignment:
| Q |
245 |
tttatttttcttgttgtttatcgtcttctcttgaatacacatggatcaagatacgatgacccaataaggatccgattcgatctcgcac------------ |
332 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33626526 |
tttatttttcttgttgtttatcgtcttctcctgtatacacatggatcaagatacgatgacccaataaggatctgattcgatctcgcacaatacgcaacaa |
33626427 |
T |
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| Q |
333 |
ttgttaaatgattttttatttgtgatttaaaatcagagagaattcct |
379 |
Q |
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| T |
33626426 |
ttgttaaatgattttttatttgtgatttaaaattagagagaattcct |
33626380 |
T |
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