View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_20 (Length: 482)
Name: NF14117_low_20
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 32592654 - 32592857
Alignment:
| Q |
1 |
accttatagtggtatatataagaaccatgcaagcaatttgatgatttctgatatcggccaacatgcattgaaggtgtaagagaacaagtagaagaaagaa |
100 |
Q |
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| T |
32592654 |
accttagagtggtatatataagaaccatgcaagcaatttgatgatttctgatatcggccaacatgcattcaaggtgtaagagaacaagtagaagaa-gaa |
32592752 |
T |
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| Q |
101 |
attaatattgttattcaaaatggaaatgatattagtttcttccgtcagtttgtccactagatgaatggattgaatataatagctgcctttatcattatga |
200 |
Q |
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| T |
32592753 |
attaatattgttattcaaaatggaaatgatattagtttcttccgtcagtttgtccactagatgaatggattgaatataatagctgcctttatcattatga |
32592852 |
T |
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| Q |
201 |
tgcta |
205 |
Q |
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||||| |
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| T |
32592853 |
tgcta |
32592857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 323 - 458
Target Start/End: Original strand, 32592998 - 32593127
Alignment:
| Q |
323 |
acttattagcaagccatttgggttggtttgatgatgatgatgatttcagtccttgaaagtgtataatttgttctcaaagttttaagtttgattctctaca |
422 |
Q |
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| T |
32592998 |
acttattcccaagccatttgggtttgtttgatgatgatgat---ttcagtccttgaaagtgtat---ttgttctcaaagttttaagttcgattctctaca |
32593091 |
T |
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| Q |
423 |
atgtcaattttaatgggatagtttagtttattagaa |
458 |
Q |
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| T |
32593092 |
atgtcaatttcaatgggatagtttagtttattagaa |
32593127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 32602878 - 32602963
Alignment:
| Q |
100 |
aattaatattgttattcaaaatggaaatgatattagtttcttccgtcagtttgtccactagatgaatggattgaatataatagctg |
185 |
Q |
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| T |
32602878 |
aattaatattgttattcaaaatggaaatgatattttgttcttccgtcagtttgtccactagatgaatgaattgaatataatagctg |
32602963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 32592907 - 32592967
Alignment:
| Q |
255 |
ggcaaaacaatagaatcttcagtaacgtatatatactttttatgtcatgtaaagagtgaca |
315 |
Q |
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| T |
32592907 |
ggcaaaacaatagaatcttcattaacgtatatatactttttatgtcatgtaaagagtgaca |
32592967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 32602812 - 32602878
Alignment:
| Q |
4 |
ttatagtggtatatataaga---accatgcaagcaatttgatgatttctgatatcggccaacatgca |
67 |
Q |
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| T |
32602812 |
ttatagtggtatatataagaccaaccatgcaagcaatttgatgatttctgacattggccaacatgca |
32602878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 32603046 - 32603085
Alignment:
| Q |
276 |
gtaacgtatatatactttttatgtcatgtaaagagtgaca |
315 |
Q |
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| T |
32603046 |
gtaacatatatatactttttatgtgatgtaaagagtgaca |
32603085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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