View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_22 (Length: 475)
Name: NF14117_low_22
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 17 - 463
Target Start/End: Complemental strand, 19349230 - 19348784
Alignment:
| Q |
17 |
agtattcatcttgtgctgttgttggtaatagtggaattttgcttaatagaaactatggtgcgttaattgatgcacatgaatttgtgattaggttaaacaa |
116 |
Q |
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| T |
19349230 |
agtattcatcttgtgctgttgttggtaatagtggaattttgcttaatagaaactatggtgcgttaattgatgcacatgaatttgtgattaggttaaacaa |
19349131 |
T |
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| Q |
117 |
tgctagggttgataactatgaatcaaaagttgggaaaaagacaagtatatcctttgtgaatagcaacattttgcatttgtgtgcaagaagatcagggtgt |
216 |
Q |
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| T |
19349130 |
tgctagggttgataactatgaatcaaaagttgggaaaaagacaagtatatcctttgtgaatagcaacattttgcatttgtgtgcaagaagatcagggtgt |
19349031 |
T |
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| Q |
217 |
ttttgtcatccatatggtgcaaatgttcctatagttatgtacatttgtcaagctgttcatttcttggattatactgtttgtaatgcttctcataagtcgc |
316 |
Q |
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| T |
19349030 |
ttttgtcatccatatggtgcaaatgttcctatagttatgtacatttgtcaagctgttcatttcttggattatactgtttgtaatgcttctcataagtcgc |
19348931 |
T |
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| Q |
317 |
cgttgttggtcacggatccgaggttcgatgtgttgtgtgctagggttgtgaagtattattcattgaagagatttgtggaggaaactgggaagggtttgga |
416 |
Q |
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| T |
19348930 |
cgttgttggtgacggatccgaggttcgatgttttgtgttctagggttgtgaagtattattctttgaagagatttgtggaggaaactgggaagggtttgga |
19348831 |
T |
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| Q |
417 |
gcaatggggttcggcgcatgatggtgctttgtttcattattcttctg |
463 |
Q |
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| T |
19348830 |
gcaatggggttcggcgcatgatggtgcattgtttcattattcttctg |
19348784 |
T |
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