View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_23 (Length: 474)
Name: NF14117_low_23
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 304149 - 303759
Alignment:
| Q |
1 |
ttaatttttaaacaatccaagctgttgaggtccctcatcgagtagagctatgtctaaagttgcccatagattggacaatcctcctctcttaagctagctt |
100 |
Q |
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| T |
304149 |
ttaatttttaaacaatccaagctgttgaggtccctcatcgagtagagctatgtctaaagttgcccatagattggacaatcctcctctcttaagctagctt |
304050 |
T |
|
| Q |
101 |
tgtagttgaattaggtctaaagtcaaaattataatat-ggggtattagagtctattatatgtatgttattggtcacttgtattttttgagctagcttttg |
199 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
304049 |
tgtagttgaattaggtctaaagtccaaattataatatgggggtattagagtctattatatgtatgttattggtcacttgtatttcttgagctagcttttg |
303950 |
T |
|
| Q |
200 |
gagttgtgttgtgcctagagccctaattcccttttgttcctgtaggaaaataattcttgaatggtgatataatagaactattatttgtttacttttctgc |
299 |
Q |
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||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
303949 |
gagttgtgttgggcctagaacccaaattcccttttgttcctgtaggaaaataattcttgaatggtgat---atagaactattatttgtttacttttctgc |
303853 |
T |
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| Q |
300 |
tgattggcaaaatcaatgttaactttattggactagcttaaggtaatgcatattttgtatggaccatgtagcaccaacacttcagattgaaggc |
393 |
Q |
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| T |
303852 |
tgattggcaaaatcaatgttaactttattggactagcttaaggtaatgcatattttgtatggactatgtagcaccaacacttcagattgaaggc |
303759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 368 - 447
Target Start/End: Complemental strand, 45467641 - 45467562
Alignment:
| Q |
368 |
tagcaccaacacttcagattgaaggcgtacatctaacacgtgttggtatccaactaacacaaacactggtaactacatac |
447 |
Q |
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| T |
45467641 |
tagcaccaacacttcagattgaaggcgtacatctaacatgtgttggtatccaactgacacaaacactggtaactacatac |
45467562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 368 - 447
Target Start/End: Original strand, 25734750 - 25734829
Alignment:
| Q |
368 |
tagcaccaacacttcagattgaaggcgtacatctaacacgtgttggtatccaactaacacaaacactggtaactacatac |
447 |
Q |
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||||||| |||||||| ||||||||||| || ||||||||||| |||| |||||||||||||||||| ||| ||||||| |
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| T |
25734750 |
tagcaccgacacttcaaattgaaggcgtgcaactaacacgtgtaggtacccaactaacacaaacacttttaattacatac |
25734829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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