View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_24 (Length: 473)
Name: NF14117_low_24
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 30768385 - 30767928
Alignment:
| Q |
1 |
tctacgatgttcaagatcgcctcggctacgacagaccaagcaaagcagtggattggctcatcaagaaagcaaagtcttccattgacaagctcgcggagct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30768385 |
tctacgatgttcaagatcgcctcggctacgacagaccaagcaaagcagtggattggctcatcaagaaagcaaagtcttccattgacaagctcgcggagct |
30768286 |
T |
|
| Q |
101 |
tcctccatggcatccaatcggcgaaaatcaaactctgaaacctctagaagaagttcagaatgtagttgcaaactcaagtggaatggttgttggagaaaca |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30768285 |
tcctccatggcatccaatcagcgaaaatcaaactctgaaacctctagaagaagttcagaatgtagttgcaaactcaagtggaatggttgttggagaaaca |
30768186 |
T |
|
| Q |
201 |
tcagaatctaatggttacagttttcatcttttaagacaattaagtgagaatcaaggtaaccataattcagctttcatttcaccacataatgttgaaactg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30768185 |
tcagaatctaatggttacagttttcatcttttaagacaattaagtgagaatcaaggtaaccataattcagctttcatttcaccacataatgttgaaactg |
30768086 |
T |
|
| Q |
301 |
atcctataccnnnnnnnccaactacatcttctacttcttcatccatcaattttcaaaactacccttctgaaaaccttggcctctctcttcattccttcca |
400 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30768085 |
atcctatacctttttttccaactacatcttctacttcttcatccatcaattttcaaaactacccttctgaaaaccttggcctctctcttcattccttcca |
30767986 |
T |
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| Q |
401 |
agatcacaatggtttcattccatggcaatcgcaacaagtatgtgaaaaccatgaaact |
458 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30767985 |
agatcacaatggtttcattccatggcaatcacaacaagtatgtgaaaaccatgaaact |
30767928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 39077359 - 39077242
Alignment:
| Q |
1 |
tctacgatgttcaagatcgcctcggctacgacagaccaagcaaagcagtggattggctcatcaagaaagcaaagtcttccattgacaagctcgcggagct |
100 |
Q |
| |
|
|||| ||||||||||| || ||||||||||||||||| || ||||| || |||||||| ||||| || || |||||| |||||||||| || | |||| |
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| T |
39077359 |
tctatgatgttcaagaccgtctcggctacgacagaccgagtaaagctgttgattggcttatcaaaaaggctaagtctgccattgacaaacttgatcagct |
39077260 |
T |
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| Q |
101 |
tcctccatggcatccaat |
118 |
Q |
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||| |||||| ||||||| |
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| T |
39077259 |
tccaccatggaatccaat |
39077242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 22328028 - 22328097
Alignment:
| Q |
1 |
tctacgatgttcaagatcgcctcggctacgacagaccaagcaaagcagtggattggctcatcaagaaagc |
70 |
Q |
| |
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||||||| || |||||||| |||||||||||| | ||||| |||||||| ||||||||||| || ||||| |
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| T |
22328028 |
tctacgacgtgcaagatcgtctcggctacgaccggccaagtaaagcagtcgattggctcattaaaaaagc |
22328097 |
T |
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