View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_26 (Length: 464)
Name: NF14117_low_26
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 48431532 - 48431263
Alignment:
| Q |
18 |
ccatccagccctctcttccttcaagctaggcagggcacgcaagaagagaaataaagctcaaagagttataattttatgaatctagttttgttcttgtaat |
117 |
Q |
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| T |
48431532 |
ccatccagccctctcttccttcaagctaggcagggcacgcaagaagagaaataaagctcaaagagttataattttatgaatctagttttgttcttgtaat |
48431433 |
T |
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| Q |
118 |
gtatggattaaaagttgctcgtgatgttattccaggttaagtatacacaatttctccttgagtctggagcaaaagtggattctttggataagaacaagaa |
217 |
Q |
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| T |
48431432 |
gtatggattaaaagttgctcgtgatgttattccaggttaagtatacacaatttctccttgagtctggagcaaaagtggattctttggataagtacaagaa |
48431333 |
T |
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| Q |
218 |
cacaacttttcatcatgcatcaggttatgacaagaaggaatgtgtgggcatgaatttgagtattaaattt |
287 |
Q |
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| T |
48431332 |
cacaacttttcatcatgcatcaggttatgacaagaaggaatgtgtgggcatgaatttgagtatcaaattt |
48431263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 337 - 404
Target Start/End: Complemental strand, 48431266 - 48431199
Alignment:
| Q |
337 |
atttcattcattgttattttagtatattaatgtcatgtagtcctacactgatttgtgctttcattccc |
404 |
Q |
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| T |
48431266 |
atttcattcattgttattttagtatattaatgtcatgtcgtcctacactgatttgtgctttcattccc |
48431199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 116 - 264
Target Start/End: Original strand, 1925459 - 1925606
Alignment:
| Q |
116 |
atgtatggattaaaagttgctcgtgatgttattccaggttaagtatacacaatttctccttgagtctggagcaaaagtggattctttggataagaacaag |
215 |
Q |
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| T |
1925459 |
atgtatggattaaaatatgctcctgatat-attccaggtgaagtgtgcgcaagctctccttgaggctggagcaaaagtagatgctttggataagaacaag |
1925557 |
T |
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| Q |
216 |
aacacaacttttcatcatgcatcaggttatgacaagaaggaatgtgtgg |
264 |
Q |
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| T |
1925558 |
aacacagctcttcattatgcagcaggttatggcaggaaagaatgtgtgg |
1925606 |
T |
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