View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14117_low_27 (Length: 461)
Name: NF14117_low_27
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 10 - 445
Target Start/End: Original strand, 28278970 - 28279405
Alignment:
| Q |
10 |
gaagaatatatcgaagggatctagacaagggaagaaagagtatgttactgaagttaaagtcattagcacattgagacaccggaatcttgtgaagttgtta |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28278970 |
gaagaaaatatcgaagggatctagacaagggaagaaagagtatgttactgaagttaaagtcattagcccattgagacaccggaatcttgtgaagttgtta |
28279069 |
T |
|
| Q |
110 |
ggttggtgccatgaaaaaggtgagtttcttcttgtttacgagtttatgtcaaacggtagccttgattctcatttatttggtaaaagaacacctcttcctt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
28279070 |
ggttggtgccatgaaaaaggtgagtttcttcttgtttatgagtttatgcctaacggtagcctggattctcatttatttggtaaaagaatacctctttctt |
28279169 |
T |
|
| Q |
210 |
ggagtgtaaggcacaaaatagcacttgaattggcatctggtgtgctttatttacatgaagaatgggaaaaatgtgtggtacatagggatattaaatcaag |
309 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28279170 |
ggagtctaaggcacaaaatagcacttgaattggcatctggtgtgctttatttacatgaagaatgggaaaaatgtgtggtacatagggatattaaatcaag |
28279269 |
T |
|
| Q |
310 |
taatgttatgttagattctagtttcaatgtcaagcttggtgattttgggttggctaaattaatagaccatgaacttgggcctcaaacaacagtgattgct |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28279270 |
taatgttatgttagattctagtttcaatgtcaagcttggtgattttgggttggctaaattaatagaccatgagcttgggcctcaaacaacagtgattgct |
28279369 |
T |
|
| Q |
410 |
ggaaccataggatatttggctccagaatatataagt |
445 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28279370 |
ggaaccttaggatatttggctccagaatatataagt |
28279405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 26 - 399
Target Start/End: Complemental strand, 28294700 - 28294327
Alignment:
| Q |
26 |
ggatctagacaagggaagaaagagtatgttactgaagttaaagtcattagcacattgagacaccggaatcttgtgaagttgttaggttggtgccatgaaa |
125 |
Q |
| |
|
||||| |||||||| |||||||||||||| |||||||||||||||||||| | ||||||| |||||||||||||| | || |||||||||||||| | |
|
|
| T |
28294700 |
ggatcaagacaaggaaagaaagagtatgtaactgaagttaaagtcattagtcaactgagacataggaatcttgtgaagcttttgggttggtgccatgaca |
28294601 |
T |
|
| Q |
126 |
aaggtgagtttcttcttgtttacgagtttatgtcaaacggtagccttgattctcatttatttggtaaaagaacacctcttccttggagtgtaaggcacaa |
225 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||| |||| ||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
28294600 |
aaggtgagtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaagaacacctctttcttggggtgtaaggcacaa |
28294501 |
T |
|
| Q |
226 |
aatagcacttgaattggcatctggtgtgctttatttacatgaagaatgggaaaaatgtgtggtacatagggatattaaatcaagtaatgttatgttagat |
325 |
Q |
| |
|
|||||| |||| |||||| |||||| |||||||| |||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28294500 |
aatagctcttggattggcttctggtttgctttatctacatgaagaatgggagaggtgtgtggttcatagggatattaaatcaagtaatgttatgttagac |
28294401 |
T |
|
| Q |
326 |
tctagtttcaatgtcaagcttggtgattttgggttggctaaattaatagaccatgaacttgggcctcaaacaac |
399 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
28294400 |
tcaagtttcaatgtcaagcttggtgattttgggttggctaagttaatggaccatgaacttgggccgcaaacaac |
28294327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 32 - 445
Target Start/End: Complemental strand, 28264879 - 28264466
Alignment:
| Q |
32 |
agacaagggaagaaagagtatgttactgaagttaaagtcattagcacattgagacaccggaatcttgtgaagttgttaggttggtgccatgaaaaaggtg |
131 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||| ||||| | ||||||| | |||||||||||| | | || ||||||||||| ||||||| |
|
|
| T |
28264879 |
agacaaggaaagaaagagtatgtaactgaagttaaagttattagtcaactgagacatagaaatcttgtgaagcttctgggatggtgccatgataaaggtg |
28264780 |
T |
|
| Q |
132 |
agtttcttcttgtttacgagtttatgtcaaacggtagccttgattctcatttatttggtaaaagaacacctcttccttggagtgtaaggcacaaaatagc |
231 |
Q |
| |
|
||||||| |||||||| ||||| ||| |||| ||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
28264779 |
agtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaaggacacctcttccttggattgtaaggcacaaaatagc |
28264680 |
T |
|
| Q |
232 |
acttgaattggcatctggtgtgctttatttacatgaagaatgggaaaaatgtgtggtacatagggatattaaatcaagtaatgttatgttagattctagt |
331 |
Q |
| |
|
||||| ||||| ||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28264679 |
acttggcttggcctctggtgtgctttatctacatgaagaatgggagaggtgtgtggtacatagggatattaaatcaagtaatgttatgctagattctagt |
28264580 |
T |
|
| Q |
332 |
ttcaatgtcaagcttggtgattttgggttggctaaattaatagaccatgaacttgggcctcaaacaacagtgattgctggaaccataggatatttggctc |
431 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| |||| |||||||| |||| || |||||||||||| |||| |||||| |||| ||| |||||| |
|
|
| T |
28264579 |
ttcaatgttaagcttggtgactttgggttggctaagctaatggaccatgagattggaccccaaacaacagtggttgccggaaccttaggctatatggctc |
28264480 |
T |
|
| Q |
432 |
cagaatatataagt |
445 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
28264479 |
cggaatatataagt |
28264466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 32 - 396
Target Start/End: Complemental strand, 28304896 - 28304532
Alignment:
| Q |
32 |
agacaagggaagaaagagtatgttactgaagttaaagtcattagcacattgagacaccggaatcttgtgaagttgttaggttggtgccatgaaaaaggtg |
131 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||| ||||| | ||||||| |||||||||||||| | ||||| ||||||||||| ||||||| |
|
|
| T |
28304896 |
agacaaggaaagaaagagtatgtaactgaagttaaagttattagtcaactgagacataggaatcttgtgaagctcttaggctggtgccatgacaaaggtg |
28304797 |
T |
|
| Q |
132 |
agtttcttcttgtttacgagtttatgtcaaacggtagccttgattctcatttatttggtaaaagaacacctcttccttggagtgtaaggcacaaaatagc |
231 |
Q |
| |
|
||||||| ||| |||| ||||| ||| |||| ||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | |
|
|
| T |
28304796 |
agtttctacttatttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaagaacacctctttcttggggtgtaaggcacaaaataac |
28304697 |
T |
|
| Q |
232 |
acttgaattggcatctggtgtgctttatttacatgaagaatgggaaaaatgtgtggtacatagggatattaaatcaagtaatgttatgttagattctagt |
331 |
Q |
| |
|
|||| |||||| |||||| |||| ||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
28304696 |
tcttggattggcctctggtttgctgtatctacatgaagaatgggagaggtgtgtggtacatagggatattaaatcaagtaatgttatgctagattcaagt |
28304597 |
T |
|
| Q |
332 |
ttcaatgtcaagcttggtgattttgggttggctaaattaatagaccatgaacttgggcctcaaac |
396 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28304596 |
tttaatgttaagcttggtgattttgggttggctaaattaatggaccatgaacttgggcctcaaac |
28304532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 32 - 445
Target Start/End: Original strand, 28288857 - 28289270
Alignment:
| Q |
32 |
agacaagggaagaaagagtatgttactgaagttaaagtcattagcacattgagacaccggaatcttgtgaagttgttaggttggtgccatgaaaaaggtg |
131 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||| ||||||| |||||||||||||| | ||||| ||||||||||| ||||||| |
|
|
| T |
28288857 |
agacaagggaagaaagagtatgtaactgaagttaaagttattagccagctgagacataggaatcttgtgaagctcttaggatggtgccatgacaaaggtg |
28288956 |
T |
|
| Q |
132 |
agtttcttcttgtttacgagtttatgtcaaacggtagccttgattctcatttatttggtaaaagaacacctcttccttggagtgtaaggcacaaaatagc |
231 |
Q |
| |
|
||||||| |||||||| ||||| ||| |||| ||||| ||||||||||||||||| || ||||| ||||||||| ||||||||||||| || |||||||| |
|
|
| T |
28288957 |
agtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttattcggaaaaaggacacctctttcttggagtgtaagacataaaatagc |
28289056 |
T |
|
| Q |
232 |
acttgaattggcatctggtgtgctttatttacatgaagaatgggaaaaatgtgtggtacatagggatattaaatcaagtaatgttatgttagattctagt |
331 |
Q |
| |
|
|||| |||||| | ||| || |||||| |||||||||||||||| | |||||||| ||||| ||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
28289057 |
tcttggattggcttttggggtactttatctacatgaagaatgggagaggtgtgtggttcatagagatatcaaatcaagtaatgttatgctagattctagt |
28289156 |
T |
|
| Q |
332 |
ttcaatgtcaagcttggtgattttgggttggctaaattaatagaccatgaacttgggcctcaaacaacagtgattgctggaaccataggatatttggctc |
431 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||| |||| || ||||| |||| || |||||||||||| |||| |||||| |||| |||||||||| |
|
|
| T |
28289157 |
ttcaatgttaagcttggtgactttgggttggctaaactaatggatcatgagattggaccccaaacaacagtggttgccggaaccttaggctatttggctc |
28289256 |
T |
|
| Q |
432 |
cagaatatataagt |
445 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
28289257 |
cagaatatataagt |
28289270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 254 - 399
Target Start/End: Complemental strand, 28341969 - 28341824
Alignment:
| Q |
254 |
ctttatttacatgaagaatgggaaaaatgtgtggtacatagggatattaaatcaagtaatgttatgttagattctagtttcaatgtcaagcttggtgatt |
353 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| || ||||| |||||||| ||||||||||| ||||||||| | | |||||||| || |||||||||| |
|
|
| T |
28341969 |
ctttatttacatgaagagtgggaacaatgtgtagtgcatagagatattaagtcaagtaatgtaatgttagatgcaaatttcaatgctaaacttggtgatt |
28341870 |
T |
|
| Q |
354 |
ttgggttggctaaattaatagaccatgaacttgggcctcaaacaac |
399 |
Q |
| |
|
|||| | || | | || |||| ||||||||||| |||||||||| |
|
|
| T |
28341869 |
ttggtcttgcaagactagtagatcatgaacttggttctcaaacaac |
28341824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 357
Target Start/End: Original strand, 43363694 - 43363761
Alignment:
| Q |
290 |
catagggatattaaatcaagtaatgttatgttagattctagtttcaatgtcaagcttggtgattttgg |
357 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| | |||||||| ||||||||||| ||||| |
|
|
| T |
43363694 |
catagggatataaaatcaagtaatgttatgttgtattcaaatttcaatgctaagcttggtgactttgg |
43363761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 357
Target Start/End: Complemental strand, 28336469 - 28336392
Alignment:
| Q |
279 |
aatgtgtggtacatagggatattaaatcaagtaatgttatgttagattctagtttcaatgtcaagcttggtgattttgg |
357 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||| ||||| ||||||||| | | || ||||| ||| |||||||||||||| |
|
|
| T |
28336469 |
aatgtgtggtgcatagagatattaagtcaagcaatgtaatgttagatgcaaatt-caatgccaaacttggtgattttgg |
28336392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 263 - 365
Target Start/End: Original strand, 47871597 - 47871699
Alignment:
| Q |
263 |
catgaagaatgggaaaaatgtgtggtacatagggatattaaatcaagtaatgttatgttagattctagtttcaatgtcaagcttggtgattttgggttgg |
362 |
Q |
| |
|
||||||||||||||| |||||||| | ||||| || || ||||| || || ||||||| || ||||||||||| |||||||||||||||||||||| |
|
|
| T |
47871597 |
catgaagaatgggaacaatgtgtgattcatagagacataaaatccagcaacattatgttggacgatagtttcaatgcaaagcttggtgattttgggttgg |
47871696 |
T |
|
| Q |
363 |
cta |
365 |
Q |
| |
|
||| |
|
|
| T |
47871697 |
cta |
47871699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 36934463 - 36934520
Alignment:
| Q |
252 |
tgctttatttacatgaagaatgggaaaaatgtgtggtacatagggatattaaatcaag |
309 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||| | |||||||| || |||||||| |
|
|
| T |
36934463 |
tgctttatttgcaggaagaatgggaaaaatgtgtgattcatagggacataaaatcaag |
36934520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 365
Target Start/End: Original strand, 36949537 - 36949621
Alignment:
| Q |
281 |
tgtgtggtacatagggatattaaatcaagtaatgttatgttagattctagtttcaatgtcaagcttggtgattttgggttggcta |
365 |
Q |
| |
|
|||||| ||||||| || || |||||||| ||||||||||| ||||||| ||||||| |||||||| ||||| ||| |||||| |
|
|
| T |
36949537 |
tgtgtgctacatagagacataaaatcaagcaatgttatgttggattctaatttcaatacaaagcttggagatttcgggctggcta |
36949621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 365
Target Start/End: Original strand, 36959671 - 36959755
Alignment:
| Q |
281 |
tgtgtggtacatagggatattaaatcaagtaatgttatgttagattctagtttcaatgtcaagcttggtgattttgggttggcta |
365 |
Q |
| |
|
|||||| ||||||| || || |||||||| ||||||||||| ||||||| ||||||| |||||||| ||||| ||| |||||| |
|
|
| T |
36959671 |
tgtgtgctacatagagacataaaatcaagcaatgttatgttggattctaatttcaatacaaagcttggagatttcgggctggcta |
36959755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 357
Target Start/End: Original strand, 36931315 - 36931420
Alignment:
| Q |
252 |
tgctttatttacatgaagaatgggaaaaatgtgtggtacatagggatattaaatcaagtaatgttatgttagattctagtttcaatgtcaagcttggtga |
351 |
Q |
| |
|
||||||| |||| |||||||||||| | |||||| | || ||||| |||||||| ||||| ||||||| ||||| ||||||||| ||||||||| |
|
|
| T |
36931315 |
tgctttacctacaggaagaatgggaacagtgtgtgcttcacagggacattaaatccagtaacattatgttggattcatgtttcaatgctcggcttggtga |
36931414 |
T |
|
| Q |
352 |
ttttgg |
357 |
Q |
| |
|
|||||| |
|
|
| T |
36931415 |
ttttgg |
36931420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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