View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14117_low_3 (Length: 705)

Name: NF14117_low_3
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14117_low_3
NF14117_low_3
[»] chr3 (1 HSPs)
chr3 (18-693)||(23801580-23802254)


Alignment Details
Target: chr3 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 18 - 693
Target Start/End: Original strand, 23801580 - 23802254
Alignment:
Q  18 atacgaacaaaaatggaccaactaaaaccaaaggttcttaattagttggaatatattcccttcaaatcatccctttgctccaaactttattaggaaaatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23801580 atacgaacaaaaatggaccaactaaaaccaaaggttcttaattagttggaatatattcccttcaaatcatccctttgctccaaactttattgggaaaatt 23801679  T
Q  118 cagtcggaagaagaaaattcatcttgtgtgtttcatagattctccgacataaatcaatcacggttaaacggcggtaaaaacttcgtatcaataacaacac 217  Q
    |||| |||||||||||| ||||||| ||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  23801680 cagtgggaagaagaaaactcatcttatgtgtttcatagattctcccacatagatcaatcacggttaaatggcggtaaaaacttcgtatcaataacaacac 23801779  T
Q  218 tnnnnnnnnncttacaatgttcaatcaatcataaccttgagatcaattaaaatgctttcctttattcgtaaggcatataatctgttgacactataaatac 317  Q
    |         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23801780 t-aaaaaaaacttacaatgttcaatcaatcataaccttgagatcaattaaaatgctttcctttattcgtaaagcatataatctgttgacactataaatac 23801878  T
Q  318 ggtctatagaaattaaccnnnnnnnngttattg--acaccattaaaacgaggagtgaatattatctcaaatactagttttctaaagcctagaaaataaat 415  Q
    ||||||||||||||||||        |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23801879 ggtctatagaaattaaccttttttttgttattgacacaccattaaaacgaggagtgaatattatctcaaatactagttttctaaagcctagaaaataaat 23801978  T
Q  416 cataatagatgttaacttttccttgattaactttttatgtgcaccctagctttgttaaaataaacaaattctcctttatgcaagtggaacaaactcggta 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23801979 cataatagatgttaacttttccttgattaactttttatgtgcacccttgctttgttgaaataaacaaattctcctttatgcaagtggaacaaactcggta 23802078  T
Q  516 tatgtnnnnnnnncaaacacacatatgaattggttagtccaaaattagggtggtaagccacgtgtgttaggtagcacaggttgctttgnnnnnnnaagaa 615  Q
    |||||        |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  23802079 tatgt-aaaaaaacaaacacacatatgaattggttagtccataattagggtggtaagccacgtgtgttaggtagcacaggttgctttgtttttttaagaa 23802177  T
Q  616 gaagaaaacattaatataagttttattatacacaaagcgaacgaaaatttgattcaatttcgtaatatataaattgat 693  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  23802178 gaagaaaacattaatataagttttattatacacaaagcgaacgaaaatttgattcaa-ttggtaatatataaattgat 23802254  T

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