View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_37 (Length: 413)
Name: NF14117_low_37
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 10 - 397
Target Start/End: Original strand, 44265266 - 44265653
Alignment:
| Q |
10 |
catcatcagtagctcttgcatgattaggaagagcaccagcaagtgcaacaaactgagacaaactcaaattagcatccaaaccagcttcagcaaggtaaca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44265266 |
catcatcagtagctcttgcatgattaggaagagcaccagcaagtgcaacaaactgagacaaactcaaattagcatccaaaccagcttcagcaaggtaaca |
44265365 |
T |
|
| Q |
110 |
atcaaccaatttagcaaccttaaccaaagcagcaccagttttaactccatcatgatctaaactaataaacctcttaaccaacctaataacaagctcaaca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44265366 |
atcaaccaatttagcaaccttaaccaaagcagcaccagttttaactccatcatgatctaaactaataaacctcttaaccaacctaataacaagctcaaca |
44265465 |
T |
|
| Q |
210 |
tccaaaagggtcccacaagtatgactgaaagaaggtatcatgagttctttcaatgaagcttgatctaactgccatgaaattcgattctcaagatcggttc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44265466 |
tccaaaagggtcccacaagtatgactgaaagaaggtatcatgagttctttcaatgaagcttgatctaactgccatgaaattcgattctcaagatcggttc |
44265565 |
T |
|
| Q |
310 |
gataagtagactcgacaagaaccatgtttgctgttttaagaaggcgaaggaggaagttgcatggaatggaatctttgtctggtggaag |
397 |
Q |
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| T |
44265566 |
gataagtagactcgacaagaaccatgtttgctgttttaagaaggcgaaggaggaagttgcatggaatggaatctttgtctggtggaag |
44265653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 10 - 291
Target Start/End: Complemental strand, 2835701 - 2835420
Alignment:
| Q |
10 |
catcatcagtagctcttgcatgattaggaagagcaccagcaagtgcaacaaactgagacaaactcaaattagcatccaaaccagcttcagcaaggtaaca |
109 |
Q |
| |
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|||||||||||||||| |||||| | ||||||||||||||||| | |||||||| | ||| |||||||||||||| | | |||||||| |||||| | |
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| T |
2835701 |
catcatcagtagctctagcatgacttggaagagcaccagcaagagtaacaaactcatccaacctcaaattagcatcaacagcagcttcacaaaggtacga |
2835602 |
T |
|
| Q |
110 |
atcaaccaatttagcaaccttaaccaaagcagcaccagttttaactccatcatgatctaaactaataaacctcttaaccaacctaataacaagctcaaca |
209 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||| | || |||| ||| ||||||| |||||||||||| | ||||||||||||||||| | |
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| T |
2835601 |
atcaaccaacttagcaaccttaaccaaagcagcaccacttttagcaccttcattatccaaactaacaaacctcttaacaagcctaataacaagctcaaaa |
2835502 |
T |
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| Q |
210 |
tccaaaagggtcccacaagtatgactgaaagaaggtatcatgagttctttcaatgaagcttgatctaactgccatgaaattc |
291 |
Q |
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|||||||| ||||||||||| ||||| |||||||| || | ||||||||||| ||||||||||||||||||||||||||| |
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| T |
2835501 |
tccaaaagtgtcccacaagtgtgactaaaagaaggaataacaagttctttcaaacaagcttgatctaactgccatgaaattc |
2835420 |
T |
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