View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_38 (Length: 411)
Name: NF14117_low_38
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 28895 - 29284
Alignment:
| Q |
18 |
tctctcatattattatactaaaccaattacacaggaatccactcacagtccctatcaagtagaatcaagattttgagatcacttgttagagcgtccaaaa |
117 |
Q |
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| T |
28895 |
tctctcatatcattatactaaaccaattacacaggaatccactcacactccccatcaagtagaatcaagagtgtgagatcacttgttagagcgtccaaaa |
28994 |
T |
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| Q |
118 |
agtactaagacgaacaacagactagtgatcatgactgccaagagacgctcacgcctcataagaaagtacctattatgttagataatcatatttgagtaat |
217 |
Q |
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| T |
28995 |
actactaagacgaacaacaaactagtgatcatgactgccaagagacgctcacgcctcataagaaagtacctattatgttagataatcatatttgagtaat |
29094 |
T |
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| Q |
218 |
gagatagataataatgaataactcttaccccacactgaaaggttcacaattgtgtgtatcttgatgatcatatttggacaaatcaatgaagaatgaaccg |
317 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29095 |
gggatagataataatgaataactcttaccccacactgaaaggttcacaattgtgtgtatcttgatgatcatatttggacaaatcaatgaagaatgaaccg |
29194 |
T |
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| Q |
318 |
attttgacaaatgatcccatgactagcttgatgactaaaaattagagtatgctttaaagttattctcaacacctctttttgtctctctgc |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29195 |
attttgacaaatgatcccatgactagcttgatgactaaaaattagagtatgctttcaagttattctcaacacctctttttgtctctctgc |
29284 |
T |
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