View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14117_low_40 (Length: 409)

Name: NF14117_low_40
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14117_low_40
NF14117_low_40
[»] chr5 (6 HSPs)
chr5 (147-393)||(35851403-35851643)
chr5 (260-399)||(35803530-35803668)
chr5 (26-109)||(35803669-35803752)
chr5 (118-259)||(16833516-16833657)
chr5 (30-112)||(35851167-35851254)
chr5 (281-362)||(10520210-10520291)
[»] chr8 (1 HSPs)
chr8 (293-344)||(7973691-7973742)
[»] chr4 (5 HSPs)
chr4 (281-344)||(47292355-47292418)
chr4 (286-344)||(45883474-45883532)
chr4 (287-392)||(56209734-56209839)
chr4 (299-359)||(45863511-45863571)
chr4 (118-176)||(56209939-56209997)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 147 - 393
Target Start/End: Original strand, 35851403 - 35851643
Alignment:
Q  147 attcaacaaatttcttgttaagctcaagaccatggtagctttaccattggagcgtgttaaatatggaag---tgtattgaaaatcaatttgcaaggtaag 243  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||| || ||||||||||   ||||||||||||||||||||||||||||    
T  35851403 attcaacaaatttcttgttaggctctagaccatggtagctttaccattggagcgttttcaatatggaagaagtgtattgaaaatcaatttgcaaggtaag 35851502  T
Q  244 atatccgatcagctcacgactatatttttcaattcaaaggtattatctctgcctgaaatttgcgattatttcttgaaagccgcttatgatcctcgtattt 343  Q
    |||||||||||||||||| ||||||| | ||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||         ||||||    
T  35851503 atatccgatcagctcacggctatattatgcaattcaaatgtattatctctgtctgaaatttgcgataatttcttgaaagccgctt---------gtattt 35851593  T
Q  344 ccgccatttatcttcatattcactcattagattgtggctgggcaaaactt 393  Q
    ||||| | |||||||||||||||||||||||||||||||||||| |||||    
T  35851594 ccgccgtctatcttcatattcactcattagattgtggctgggcagaactt 35851643  T

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Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 260 - 399
Target Start/End: Complemental strand, 35803668 - 35803530
Alignment:
Q  260 cgactatatttttcaattcaaaggtattatctctgcctgaaatttgcgattatttcttgaaagccgcttatgatcctcgtatttccgccatttatcttca 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35803668 cgactatatttttcaattcaaaggtattatctctgcctgaaatttgcgattatttcttgaaagccgcttatgatcctcgtatttccgccatttatcttca 35803569  T
Q  360 tattcactcattagattgtggctgggcaaaactttgatga 399  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  35803568 tattcactcattagattgtggctgggcaaaa-tttgatga 35803530  T

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Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 35803752 - 35803669
Alignment:
Q  26 gagagagcagcattccggacagaaaccctaaacgtactctttcttccttacatttcgaaatccctaattcagcagcgacaacat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35803752 gagagagcagcattccggacagaaaccctaaacgtactctttcttccttacattttgaaatccctaattcagcagcgacaacat 35803669  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 118 - 259
Target Start/End: Original strand, 16833516 - 16833657
Alignment:
Q  118 ggtgagttcaatttcgagcccctcaccggattcaacaaatttcttgttaagctcaagaccatggtagctttaccattggagcgtgttaaatatggaagtg 217  Q
    ||||||||||||||| ||||||||||| ||||||| |||||||||||||  || |||||||||||||| ||| | | |||| |  || |  |||||||||    
T  16833516 ggtgagttcaatttccagcccctcaccagattcaaaaaatttcttgttactctgaagaccatggtagcattatcttcggagtgcattcagcatggaagtg 16833615  T
Q  218 tattgaaaatcaatttgcaaggtaagatatccgatcagctca 259  Q
    |||| ||||||| |||| | ||| ||||||| ||||||||||    
T  16833616 tattaaaaatcactttggatggtcagatatcggatcagctca 16833657  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 35851167 - 35851254
Alignment:
Q  30 gagcagcattccggacagaaacccta-----aacgtactctttcttccttacatttcgaaatccctaattcagcagcgacaacatgtc 112  Q
    ||||||||||||||| ||||||||||     ||||||||||||||||| |||||||| ||| |||||||||||||| |||||||||||    
T  35851167 gagcagcattccggagagaaaccctaacctaaacgtactctttcttccatacatttccaaaaccctaattcagcagtgacaacatgtc 35851254  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 362
Target Start/End: Original strand, 10520210 - 10520291
Alignment:
Q  281 aggtattatctctgcctgaaatttgcgattatttcttgaaagccgcttatgatcctcgtatttccgccatttatcttcatat 362  Q
    |||| |||||||| ||| ||||||||| | ||||||||||||| || ||||||||| ||||||||||  |||||||||||||    
T  10520210 aggtgttatctcttcctcaaatttgcggtaatttcttgaaagcagcatatgatccttgtatttccgctgtttatcttcatat 10520291  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 7973742 - 7973691
Alignment:
Q  293 tgcctgaaatttgcgattatttcttgaaagccgcttatgatcctcgtatttc 344  Q
    ||||| ||||||||||  |||| |||||||||||||||||||||||||||||    
T  7973742 tgcctcaaatttgcgagaatttgttgaaagccgcttatgatcctcgtatttc 7973691  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 344
Target Start/End: Original strand, 47292355 - 47292418
Alignment:
Q  281 aggtattatctctgcctgaaatttgcgattatttcttgaaagccgcttatgatcctcgtatttc 344  Q
    |||||| ||||||||||  |||||||||| |||| ||||||||||| ||||||| |||||||||    
T  47292355 aggtatcatctctgcctcgaatttgcgataatttgttgaaagccgcatatgatcatcgtatttc 47292418  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 344
Target Start/End: Complemental strand, 45883532 - 45883474
Alignment:
Q  286 ttatctctgcctgaaatttgcgattatttcttgaaagccgcttatgatcctcgtatttc 344  Q
    |||||||| ||  ||||||||||| |||| |||||||| ||||||||||||||||||||    
T  45883532 ttatctcttccccaaatttgcgataatttgttgaaagcagcttatgatcctcgtatttc 45883474  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 392
Target Start/End: Complemental strand, 56209839 - 56209734
Alignment:
Q  287 tatctctgcctgaaatttgcgattatttcttgaaagccgcttatgatcctcgtatttccgccatttatcttcatattcactcattagattgtggctgggc 386  Q
    ||||||||||| || |||||||| || | |||||||| |||||||||| ||||||||| ||| | ||||||| |||| |  | ||| ||||||| |||||    
T  56209839 tatctctgcctcaattttgcgataatatgttgaaagcagcttatgatcatcgtatttctgccgtatatcttcgtattgatactttaaattgtggttgggc 56209740  T
Q  387 aaaact 392  Q
     |||||    
T  56209739 taaact 56209734  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 359
Target Start/End: Complemental strand, 45863571 - 45863511
Alignment:
Q  299 aaatttgcgattatttcttgaaagccgcttatgatcctcgtatttccgccatttatcttca 359  Q
    ||||||| ||| |||| |||||||| |||||||||||||||||||| ||| | ||||||||    
T  45863571 aaatttgagataatttgttgaaagcagcttatgatcctcgtatttctgccgtatatcttca 45863511  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 56209997 - 56209939
Alignment:
Q  118 ggtgagttcaatttcgagcccctcaccggattcaacaaatttcttgttaagctcaagac 176  Q
    ||||| |||||||||| |||||  ||||| ||||| |||||||| ||||||||||||||    
T  56209997 ggtgacttcaatttcgtgccccataccggcttcaaaaaatttctcgttaagctcaagac 56209939  T

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