View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_44 (Length: 388)
Name: NF14117_low_44
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 6300119 - 6300489
Alignment:
| Q |
1 |
tggactacaaatccatctctctgcatcatcccatttagaaggtattgttcttccactgttgaagggtgaaacgccagctacataggcttgtcttctgata |
100 |
Q |
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| T |
6300119 |
tggactacaaatccatctctctgcatcatcccatttagaaggtattgttcttccactgttgaagggtgaaacgccagctacataggcttgtcttctgata |
6300218 |
T |
|
| Q |
101 |
ttgctgcttgttgttggatgcaacaatactctttctgagttccaccctttttggttttcaatgnnnnnnnctctgtagtttggttcctttggacttagga |
200 |
Q |
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| T |
6300219 |
ttgctgcttgttgttggatgcaacaatactctttctgagttccaccctttttggttttcaatgtttttttctctgtaatttggttcctttggacttagga |
6300318 |
T |
|
| Q |
201 |
atgaacctagtttctgagaggtaccagaattctttttcatattaacactaactcagttttgcagcttgcaaaaccctcttgagaagcactatgtgactac |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6300319 |
atgaacctagtttctgagagggaccagaattctttttcatattaacactaactcagttttgcagcttgcaaaaccctcttgagaagcactatgtgactac |
6300418 |
T |
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| Q |
301 |
caatatgataaatactgtttttgctatggttagtatatgatactaagtttagatactataccaagactgat |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6300419 |
caatatgataaatactgtttttgctatggttagtatatgatactaagtttagatactataccaagactgat |
6300489 |
T |
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