View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14117_low_47 (Length: 377)
Name: NF14117_low_47
Description: NF14117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14117_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 54 - 286
Target Start/End: Original strand, 2182792 - 2183023
Alignment:
| Q |
54 |
tgaggccatactaggatgtcttaccaatatgcagttttgtttgaacttgtttatcaggatattttggattatgttcaaggtggtgaaattttatatattc |
153 |
Q |
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| T |
2182792 |
tgaggccatactaggatgtcttaccaatatgcagctttgttt-aacttctttatcaggatattttgaattatgttcaaggtggtgacattttatacattc |
2182890 |
T |
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| Q |
154 |
ccggaacaatgactccaaccgaagtaagtgtcaactttccggttcaaactgttaaaagatatcatgatttattcctgcaatattaatgctcaatccattg |
253 |
Q |
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| T |
2182891 |
ccggaacaatgactccaaccgaagtaagtgtcaacttttaggttcaagctgttaacagatttcatgatttattcctgcaatataaatgttcaatccattg |
2182990 |
T |
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| Q |
254 |
catttgactgtgtagaagaattgggagaaatca |
286 |
Q |
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| T |
2182991 |
catttgactgtctaaaagaattaggagaaatca |
2183023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 78 - 191
Target Start/End: Original strand, 3574329 - 3574441
Alignment:
| Q |
78 |
caatatgcagttttgtttgaacttgtttatcaggatattttggattatgttcaaggtggtgaaattttatatattcccggaacaatgactccaaccgaag |
177 |
Q |
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| T |
3574329 |
caatatgcagtcttgttttaacttgtt-atcaatatattttggactatgttcaaggtggtgaaattttatatatcccccggacaatgactccaactgaag |
3574427 |
T |
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| Q |
178 |
taagtgtcaacttt |
191 |
Q |
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|||| |||||||| |
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| T |
3574428 |
aaagtttcaacttt |
3574441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 2677898 - 2677849
Alignment:
| Q |
11 |
catcatcagcactcttccatgatgtcaaatatctatcaagacctgaggcc |
60 |
Q |
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| T |
2677898 |
catcatcagcactcttccatgatgtcaaatatctatcaagacctgaggcc |
2677849 |
T |
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